SMTL ID : 6q8a.1

Neisseria gonorrhoeae Leucyl-tRNA Synthetase in Complex with 5'-O-(N-(L-Leucyl)-Sulfamoyl)Cytidine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x HQ5: 5'-O-(N-(L-Leucyl)-Sulfamoyl)Cytidine(Non-covalent)

HQ5.1: 19 residues within 4Å: Chain A: M.41, F.42, P.43, Y.44, H.50, G.52, H.53, N.56, Y.57, D.81, S.511, Y.514, Y.542, G.544, G.545, E.547, H.548, H.552, Q.581 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:M.41, A:F.42 Hydrogen bonds: A:F.42, A:Y.44, A:H.50, A:D.81, A:G.545, A:Q.581 Water bridges: A:G.52, A:E.547, A:E.547, A:E.547, A:V.584 Salt bridges: A:H.53

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.450, C.453, C.491, C.494 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.450, A:C.453, A:C.491, A:C.494

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: K.209, E.211 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nautiyal, M. et al., Comparative analysis of pyrimidine substituted aminoacyl-sulfamoyl nucleosides as potential inhibitors targeting class I aminoacyl-tRNA synthetases. Eur.J.Med.Chem. (2019)

Release Date

2019-04-17

Peptides

Leucine--tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine--tRNA ligase

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