- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-2-2-2-2-2-2-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x 3PE: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)
3PE.3: 18 residues within 4Å:- Chain C: W.30, F.95, M.96, G.99, Y.103, Y.104, F.276, L.301, M.316, Q.322, F.325, W.326, L.332, L.333, Y.358
- Chain G: C.44, V.48
- Ligands: CDL.4
15 PLIP interactions:14 interactions with chain C, 1 interactions with chain G- Hydrophobic interactions: C:W.30, C:W.30, C:F.95, C:Y.103, C:F.276, C:L.301, C:F.325, C:W.326, C:W.326, C:L.332, C:L.333, G:V.48
- Hydrogen bonds: C:Y.103, C:Y.104, C:Y.104
3PE.9: 6 residues within 4Å:- Chain C: Y.75
- Chain D: M.203, K.206, M.207
- Chain E: N.53, Q.57
4 PLIP interactions:1 interactions with chain E, 1 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: E:Q.57, C:Y.75, C:Y.75
- Salt bridges: D:K.206
3PE.14: 15 residues within 4Å:- Chain M: W.30, F.95, M.96, G.99, Y.103, Y.104, L.301, M.316, Q.322, F.325, W.326, L.332, Y.358
- Chain Q: V.48
- Ligands: CDL.15
10 PLIP interactions:10 interactions with chain M- Hydrophobic interactions: M:W.30, M:W.30, M:Y.103, M:Y.104, M:L.301, M:F.325, M:W.326, M:W.326
- Hydrogen bonds: M:Y.103, M:Q.322
3PE.19: 10 residues within 4Å:- Chain M: M.240
- Chain N: H.199, M.203, K.206, M.210
- Chain O: A.50, N.53, V.54, Q.57
- Chain T: D.36
3 PLIP interactions:1 interactions with chain O, 2 interactions with chain N- Hydrophobic interactions: O:V.54
- Salt bridges: N:H.199, N:K.206
- 5 x CDL: CARDIOLIPIN(Non-covalent)
CDL.4: 10 residues within 4Å:- Chain C: S.28, S.29, W.30
- Chain F: Q.72
- Chain G: V.37, R.40, T.41, C.44
- Ligands: 3PE.3, CDL.10
8 PLIP interactions:3 interactions with chain G, 4 interactions with chain C, 1 interactions with chain F- Hydrophobic interactions: G:V.37, C:W.30
- Salt bridges: G:R.40, G:R.40
- Hydrogen bonds: C:S.29, C:S.29, C:W.30, F:Q.72
CDL.5: 8 residues within 4Å:- Chain C: I.13, N.16, L.197, L.198, H.201
- Chain M: A.17, L.197, L.198
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:L.197
- Hydrogen bonds: C:H.201
CDL.10: 17 residues within 4Å:- Chain C: S.29, N.32, L.36, G.231, L.234
- Chain D: Y.219, K.222, R.223, K.230
- Chain F: R.71
- Chain G: Y.29, F.30, G.33, N.36, V.37, R.40
- Ligands: CDL.4
11 PLIP interactions:3 interactions with chain G, 6 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: G:F.30, D:Y.219, C:L.36
- Hydrogen bonds: G:N.36, D:K.230, D:K.230
- Salt bridges: G:R.40, D:K.222, D:R.223, D:K.230, C:K.227
CDL.15: 8 residues within 4Å:- Chain M: S.28, S.29, W.30
- Chain P: Q.72
- Chain Q: R.40, T.41
- Ligands: 3PE.14, CDL.18
8 PLIP interactions:6 interactions with chain M, 1 interactions with chain Q, 1 interactions with chain P- Hydrophobic interactions: M:W.30, Q:T.41
- Hydrogen bonds: M:S.28, M:S.28, M:S.28, M:S.29, M:S.29, P:Q.72
CDL.18: 18 residues within 4Å:- Chain M: S.29, N.32, L.230, G.231, L.234
- Chain N: L.215, P.216, Y.219, K.222, R.223, K.230
- Chain P: Q.72
- Chain Q: Y.29, G.33, N.36, V.37, R.40
- Ligands: CDL.15
18 PLIP interactions:10 interactions with chain N, 4 interactions with chain Q, 4 interactions with chain M- Hydrophobic interactions: N:L.215, N:P.216, N:Y.219, N:Y.219, Q:Y.29, M:L.230, M:L.230, M:L.234
- Hydrogen bonds: N:Y.219, N:R.223, N:K.230, N:K.230, Q:Y.29, Q:N.36
- Salt bridges: N:K.222, N:K.222, Q:R.40, M:K.227
- 3 x U10: UBIQUINONE-10(Non-covalent)
U10.6: 11 residues within 4Å:- Chain C: A.125, G.142, V.145, I.146, L.149, P.270, F.274, A.277, Y.278, L.281, L.294
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:A.125, C:I.146, C:L.149, C:F.274, C:A.277, C:L.294
U10.7: 13 residues within 4Å:- Chain C: A.17, F.18, L.21, W.31, S.35, G.38, M.194, L.197, H.201, S.205, F.220, D.228
- Ligands: HEM.2
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:L.197, C:L.197, C:F.220
- Hydrogen bonds: C:S.35, C:S.205
U10.16: 15 residues within 4Å:- Chain M: A.17, F.18, L.21, W.31, G.34, S.35, L.41, A.190, M.194, L.197, H.201, S.205, F.220, D.228
- Ligands: HEM.13
5 PLIP interactions:5 interactions with chain M- Hydrophobic interactions: M:F.18, M:L.41, M:A.190, M:L.197
- pi-Stacking: M:F.220
- 2 x HEC: HEME C(Covalent)
HEC.8: 18 residues within 4Å:- Chain D: V.36, C.37, S.39, C.40, H.41, A.108, L.109, P.111, L.113, I.116, R.120, Y.126, L.130, F.152, I.157, G.158, M.159, P.162
9 PLIP interactions:9 interactions with chain D,- Hydrophobic interactions: D:V.36, D:P.111, D:L.113, D:I.116, D:L.130, D:I.157
- Hydrogen bonds: D:G.158
- Salt bridges: D:R.120
- Metal complexes: D:H.41
HEC.17: 15 residues within 4Å:- Chain N: V.36, C.37, C.40, H.41, N.105, A.108, P.110, I.116, R.120, Y.126, L.130, F.152, G.158, M.159, P.162
9 PLIP interactions:9 interactions with chain N,- Hydrophobic interactions: N:P.110, N:I.116, N:L.130, N:M.159
- Hydrogen bonds: N:Y.126
- Salt bridges: N:R.120
- pi-Stacking: N:H.41, N:H.41
- Metal complexes: N:H.41
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.11: 7 residues within 4Å:- Chain E: C.139, H.141, L.142, C.144, C.158, H.161, S.163
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.139, E:H.141, E:C.158, E:H.161
FES.20: 7 residues within 4Å:- Chain O: C.139, H.141, L.142, C.144, C.158, H.161, S.163
4 PLIP interactions:4 interactions with chain O,- Metal complexes: O:C.139, O:H.141, O:C.158, O:H.161
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Letts, J.A. et al., Structures of Respiratory Supercomplex I+III2Reveal Functional and Conformational Crosstalk. Mol.Cell (2019)
- Release Date
- 2019-08-21
- Peptides
- Ubiquinol-cytochrome c reductase core protein 1: AK
Ubiquinol-cytochrome c reductase core protein 2: BL
Cytochrome b: CM
Cytochrome c1: DN
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EO
Cytochrome b-c1 complex subunit 7: FP
Ubiquinol-cytochrome c reductase complex III subunit VII: GQ
Cytochrome b-c1 complex subunit 6: HR
Cytochrome b-c1 complex subunit Rieske, mitochondrial: IS
Ubiquinol-cytochrome c reductase, complex III subunit X: JT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
a1K
a3B
a2L
a4C
b1M
b2D
c1N
c2E
f1O
f2F
d1P
d2G
q1Q
q2H
h1R
h2I
x1S
x2J
i1T
i2 - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 6q9e.1
Complex III2 focused refinement from Ovine respiratory supercomplex I+III2
Ubiquinol-cytochrome c reductase core protein 1
Ubiquinol-cytochrome c reductase core protein 2
Cytochrome b
Toggle Identical (CM)Cytochrome c1
Cytochrome b-c1 complex subunit Rieske, mitochondrial
Cytochrome b-c1 complex subunit 7
Ubiquinol-cytochrome c reductase complex III subunit VII
Cytochrome b-c1 complex subunit 6
Toggle Identical (HR)Cytochrome b-c1 complex subunit Rieske, mitochondrial
Ubiquinol-cytochrome c reductase, complex III subunit X
Related Entries With Identical Sequence
1bcc.1 | 1izl.1 | 2bcc.1 | 2p5t.2 | 3bcc.1 | 5j4z.55 | 5j4z.66 | 5j7y.51 | 5j7y.55 | 5j7y.62 | 5j7y.66 | 5j8k.51 | 5j8k.55 | 5j8k.62 | 5j8k.66 | 6qbx.1 | 6qbx.2 | 6qbx.3 | 6qbx.4 | 6qbx.5 | 6qbx.6 | 6qbx.7 | 6qbx.8 | 6qbx.10 | 6qbx.11 | 6qbx.12 | 6qbx.13 | 6qbx.14 | 6qbx.15 | 6qbx.16 more...less...6qbx.17 | 6qbx.18 | 6qbx.20 | 6qc2.29 | 6qc2.30 | 6qc2.31 | 6qc2.32 | 6qc2.33 | 6qc2.34 | 6qc2.35 | 6qc2.36 | 6qc2.38 | 6qc2.39 | 6qc2.40 | 6qc2.41 | 6qc2.42 | 6qc2.43 | 6qc2.44 | 6qc2.45 | 6qc2.46 | 6qc2.48 | 6qc3.1 | 6qc3.2 | 6qc3.3 | 6qc3.4 | 6qc3.5 | 6qc3.6 | 6qc3.7 | 6qc3.8 | 6qc3.10 | 6qc3.11 | 6qc3.12 | 6qc3.13 | 6qc3.14 | 6qc3.15 | 6qc3.16 | 6qc3.17 | 6qc3.18 | 6qc3.20 | 6qc4.1 | 6qc4.2 | 6qc4.3 | 6qc4.4 | 6qc4.5 | 6qc4.6 | 6qc4.7 | 6qc4.8 | 6qc4.10 | 6qc4.11 | 6qc4.12 | 6qc4.13 | 6qc4.14 | 6qc4.15 | 6qc4.16 | 6qc4.17 | 6qc4.18 | 6qc4.20 | 6w6e.1 | 6w6g.1 | 6yxy.16 | 7f4v.1 | 7l6n.1 | 7pkq.1 | 8gbs.1 | 8p0y.1