SMTL ID : 6q9r.2 (1 other biounit)

Crystal structure of the pathological N184K variant of calcium-free human gelsolin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

monomer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: Y.110, R.143 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: R.565, R.652 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: R.184 Ligand excluded by PLIP

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: R.481, G.746, F.747, E.748, W.759, D.761, W.764 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.748, A:D.761 Water bridges: A:Y.763 GOL.5: 11 residues within 4Å: Chain A: D.436, I.485, Y.487, V.518, S.520, P.528, Q.702, F.704, T.741, P.749, S.751 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.487, A:Q.702, A:S.751 GOL.6: 6 residues within 4Å: Chain A: K.526, W.700, D.701, R.734, D.735, T.738 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.526, A:D.701, A:R.734, A:R.734, A:D.735 GOL.7: 7 residues within 4Å: Chain A: T.152, T.382, P.383, L.384, Y.405, S.407, R.664 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.382, A:T.382, A:L.384, A:H.409, A:R.664 GOL.8: 6 residues within 4Å: Chain A: Q.387, H.661, P.662, R.664, D.698, W.700 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.387, A:H.661, A:R.664 GOL.9: 7 residues within 4Å: Chain A: A.431, Q.432, K.657, M.658, T.699, D.701, W.755 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.701 Water bridges: A:Q.702 GOL.10: 5 residues within 4Å: Chain A: E.511, G.515, K.709, K.716, K.744 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.515, A:K.709, A:K.716, A:K.716, A:K.744 GOL.11: 5 residues within 4Å: Chain A: L.64, Y.82, Y.156, F.157, K.158 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.82, A:K.158, A:S.159 GOL.12: 3 residues within 4Å: Chain A: Q.745, G.746, W.764 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.745, A:D.761

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.13: 3 residues within 4Å: Chain A: T.440, G.441, K.443 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.443

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Rosa, M. et al., The structure of N184K amyloidogenic variant of gelsolin highlights the role of the H-bond network for protein stability and aggregation properties. Eur.Biophys.J. (2020)

Release Date

2019-11-27

Peptides

Gelsolin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Gelsolin

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