SMTL ID : 6qau.1 (1 other biounit)

Crystal structure of ULK2 in complexed with MRT67307

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

homo-dimer

Ligands

2 x 1FV: N-{3-[(5-cyclopropyl-2-{[3-(morpholin-4-ylmethyl)phenyl]amino}pyrimidin-4-yl)amino]propyl}cyclobutanecarboxamide(Non-covalent)

1FV.1: 21 residues within 4Å: Chain A: V.19, G.20, H.21, G.22, A.25, V.27, A.41, K.43, V.73, M.89, E.90, Y.91, C.92, N.93, G.94, G.95, Q.139, L.142, D.162 Ligands: EDO.5, GOL.6 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.25, A:V.27, A:A.41, A:V.73, A:M.89, A:Y.91, A:L.142 Hydrogen bonds: A:C.92, A:C.92 Water bridges: A:Q.139, A:D.162, A:D.162 1FV.8: 21 residues within 4Å: Chain B: V.19, G.20, H.21, G.22, A.25, V.27, A.41, K.43, V.73, M.89, E.90, Y.91, C.92, N.93, G.94, G.95, Q.139, L.142, D.162 Ligands: EDO.12, GOL.13 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:A.25, B:V.27, B:A.41, B:V.73, B:M.89, B:Y.91, B:L.142 Hydrogen bonds: B:C.92, B:C.92 Water bridges: B:Q.139, B:D.162

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: S.14, D.17, R.29 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.14, A:R.29 EDO.3: 3 residues within 4Å: Chain A: D.10, H.32, Q.34 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.34 EDO.4: 3 residues within 4Å: Chain A: R.242, T.244, A.249 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.242 EDO.5: 7 residues within 4Å: Chain A: H.21, G.22, K.137, D.162 Chain B: L.178 Ligands: 1FV.1, GOL.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.137, A:K.137, A:D.162 Water bridges: A:D.162 EDO.9: 3 residues within 4Å: Chain B: S.14, D.17, R.29 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.14, B:R.29 EDO.10: 3 residues within 4Å: Chain B: D.10, H.32, Q.34 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.10, B:Q.34 EDO.11: 3 residues within 4Å: Chain B: R.242, T.244, A.249 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.242 EDO.12: 7 residues within 4Å: Chain A: L.178 Chain B: H.21, G.22, K.137, D.162 Ligands: 1FV.8, GOL.13 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.137, B:K.137, B:D.162 Water bridges: B:D.135

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: A.25, K.43, I.45, I.55, E.60, D.162, G.164 Ligands: 1FV.1, EDO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.43, A:E.60, A:D.162 Water bridges: A:L.57 GOL.13: 9 residues within 4Å: Chain B: A.25, K.43, I.45, I.55, E.60, D.162, G.164 Ligands: 1FV.8, EDO.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.43, B:D.162 Water bridges: B:L.57

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 1 residues within 4Å: Chain A: Y.168 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Chain B: Y.168 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Conservation of structure, function and inhibitor binding in UNC-51-like kinase 1 and 2 (ULK1/2). Biochem.J. (2019)

Release Date

2019-02-27

Peptides

Serine/threonine-protein kinase ULK2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Serine/threonine-protein kinase ULK2

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