SMTL ID : 6qav.2 (1 other biounit)

Crystal structure of ULK2 in complexed with MRT68921

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x HVH: ~{N}-[3-[[5-cyclopropyl-2-[(2-methyl-3,4-dihydro-1~{H}-isoquinolin-6-yl)amino]pyrimidin-4-yl]amino]propyl]cyclobutanecarboxamide(Non-covalent)

HVH.1: 19 residues within 4Å: Chain A: V.19, G.20, H.21, G.22, V.27, A.41, K.43, V.73, M.89, E.90, Y.91, C.92, G.95, D.96, D.99, Q.139, L.142, A.161, D.162 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.19, A:V.27, A:V.27, A:A.41, A:V.73, A:M.89, A:Y.91, A:L.142, A:A.161 Hydrogen bonds: A:C.92, A:C.92, A:Q.139 Water bridges: A:N.140, A:D.162 Salt bridges: A:D.96, A:D.99 HVH.6: 18 residues within 4Å: Chain B: V.19, G.20, H.21, G.22, V.27, A.41, K.43, V.73, M.89, E.90, Y.91, C.92, G.95, D.96, D.99, Q.139, L.142, D.162 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:V.19, B:V.27, B:V.27, B:A.41, B:V.73, B:M.89, B:Y.91, B:L.142 Hydrogen bonds: B:C.92, B:C.92, B:Q.139 Water bridges: B:D.162 Salt bridges: B:D.96, B:D.99

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: K.43, I.45, L.56, E.60, G.164 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.43, A:L.56, A:E.60, A:E.60 Water bridges: A:G.58 EDO.3: 2 residues within 4Å: Chain A: S.108, E.109 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.109 Water bridges: A:L.212 EDO.4: 5 residues within 4Å: Chain A: I.240, P.241, R.242, T.244, A.249 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.240 EDO.7: 4 residues within 4Å: Chain B: N.93, Y.145, R.148, S.151 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.151 EDO.8: 3 residues within 4Å: Chain B: L.56, G.58, G.164 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.56, B:G.58 Water bridges: B:K.43 EDO.9: 3 residues within 4Å: Chain B: V.78, Q.79, E.80 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.80 EDO.10: 3 residues within 4Å: Chain A: S.51 Chain B: K.47, E.80 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.80, A:S.51, A:S.51

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: M.5, E.12, R.31 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Conservation of structure, function and inhibitor binding in UNC-51-like kinase 1 and 2 (ULK1/2). Biochem.J. (2019)

Release Date

2019-02-27

Peptides

Serine/threonine-protein kinase ULK2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Serine/threonine-protein kinase ULK2

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