SMTL ID : 6qbe.1

Crystal structure of non-toxic HaNLP3 protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: W.153, I.158, Y.160, N.188 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 6 residues within 4Å: Chain A: D.207, R.210, R.211, N.214, D.227, L.228 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.211

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: L.53, N.169, M.174, A.193 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain A: S.43, R.98, S.99, M.201, W.202, H.203 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.43, A:S.99, A:W.202, A:H.203 Water bridges: A:R.98, A:R.98 Salt bridges: A:H.203 PO4.5: 4 residues within 4Å: Chain A: H.125, H.154, N.184, H.185 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.184, A:H.185 Water bridges: A:D.117, A:D.128, A:H.154, A:N.184 Salt bridges: A:H.125, A:H.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lenarcic, T. et al., Molecular basis for functional diversity among microbial Nep1-like proteins. Plos Pathog. (2019)

Release Date

2019-08-28

Peptides

Nep1-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nep1-like protein