SMTL ID : 6qcu.1

Crystal structure of a Fab portion of the anti EBOV 3T0331 antibody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.108 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.109 Salt bridges: A:R.108 SO4.2: 4 residues within 4Å: Chain B: Q.46, A.61, D.62, S.63 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.46, B:D.62, B:S.63, B:S.63 SO4.3: 4 residues within 4Å: Chain A: Y.32, R.91 Chain B: R.101, R.104 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Y.32, A:Y.32 Salt bridges: A:R.91, B:R.101, B:R.104 Water bridges: B:R.101, B:R.101 SO4.4: 5 residues within 4Å: Chain B: S.7, G.8, G.9, S.115, L.116 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.8, B:G.9 Water bridges: B:L.116, B:L.116, B:L.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Diskin, R. et al., rVSV-ZEBOV induces a polyclonal and convergent B cell response with potent Ebola virus-neutralizing antibodies. Nat.Med. (N.Y.) (2019)

Release Date

2019-10-02

Peptides

Light chain: A
Heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Light chain

Heavy chain

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