SMTL ID : 6qdi.1

anti-sigma factor domain-containing protein from Clostridium clariflavum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: D.221, D.222, I.242, G.268, L.269, A.270 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.221, A:D.222, A:A.270 Water bridges: A:D.222, A:D.222 EDO.2: 7 residues within 4Å: Chain A: D.68, N.69, N.113, T.114, G.115, N.116 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.68, A:N.69, A:N.113, A:N.116

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: D.68, N.69, N.112, T.114, G.115, N.116 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.68, A:T.114, A:N.116 CA.4: 7 residues within 4Å: Chain A: D.221, D.222, N.266, G.268, L.269, A.270 Ligands: EDO.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.221, A:D.222, A:G.268, A:A.270 CA.5: 3 residues within 4Å: Chain A: D.163, D.195, K.197 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.163, A:K.197, H2O.5, H2O.12, H2O.13 CA.6: 3 residues within 4Å: Chain A: D.10, D.42, S.44 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.10, A:D.42, A:S.44, H2O.6, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grinberg, I.R. et al., Distinctive ligand-binding specificities of tandem PA14 biomass-sensory elements from Clostridium thermocellum and Clostridium clariflavum. Proteins (2019)

Release Date

2019-06-12

Peptides

PA14 domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PA14 domain-containing protein