SMTL ID : 6qe5.1 (1 other biounit)

Structure of E.coli RlmJ in complex with the natural cofactor product S-adenosyl-homocysteine (SAH)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: L.22, Y.24, H.26, K.38, H.39, D.60, T.61, H.62, A.63, G.64, G.119, S.120, E.138, L.139, H.140, A.162, D.163, G.164, D.184, P.186 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:H.62, A:G.64, A:S.120, A:S.120, A:L.139, A:D.163, A:D.163, A:G.164, A:D.184 Water bridges: A:Y.24, A:A.63, A:Y.68, A:D.143 Salt bridges: A:H.26, A:K.38, A:H.39 pi-Cation interactions: A:H.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oerum, S. et al., Bisubstrate analogues as structural tools to investigate m6A methyltransferase active sites. Rna Biol. (2019)

Release Date

2019-03-27

Peptides

Ribosomal RNA large subunit methyltransferase J: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosomal RNA large subunit methyltransferase J

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