SMTL ID : 6qfe.2 (1 other biounit)

Crystal Structure of Human Kallikrein 5 in complex with GSK144

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: S.5, K.118, C.140, N.142 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.3, R.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.172 Water bridges: A:N.3, A:N.142

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain A: G.4 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.4, A:Q.139, A:Q.139

1 x J08: 4-[(5-phenyl-1~{H}-imidazol-2-yl)methylamino]-2-(pyridin-3-ylmethoxy)benzenecarboximidamide(Non-covalent)

J08.4: 16 residues within 4Å: Chain A: H.42, H.81, P.82, D.173, S.174, C.175, Q.176, S.179, V.193, S.194, W.195, G.196, D.197, Y.198, C.200, G.207 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.42, A:P.82, A:Q.176, A:V.193 Hydrogen bonds: A:D.173, A:D.173, A:S.174, A:S.179, A:S.179, A:D.197 Water bridges: A:G.177, A:V.208 pi-Stacking: A:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thorpe, J.H. et al., Evaluation of a crystallographic surrogate for kallikrein 5 in the discovery of novel inhibitors for Netherton syndrome. Acta Crystallogr.,Sect.F (2019)

Release Date

2019-05-08

Peptides

Kallikrein-5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Kallikrein-5

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