SMTL ID : 6qgb.6 (5 other biounits)

Crystal structure of Ideonella sakaiensis MHETase bound to benzoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.1: 10 residues within 4Å: Chain A: G.125, S.218, L.247, A.250, W.390, R.404, F.408, S.409, F.488, H.521 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.247, A:W.390, A:W.390, A:F.488 pi-Stacking: A:F.408 Salt bridges: A:R.404

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.297, D.300, L.302, D.304, I.306 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.297, A:D.300, A:L.302, A:I.306, H2O.1

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: D.70 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: G.582, D.583, N.589 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: R.512, P.571, Q.574 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.512 SO4.6: 3 residues within 4Å: Chain A: R.117, F.150, V.538 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.117 Water bridges: A:T.535

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Palm, G.J. et al., Structure of the plastic-degrading Ideonella sakaiensis MHETase bound to a substrate. Nat Commun (2019)

Release Date

2019-04-03

Peptides

Mono(2-hydroxyethyl) terephthalate hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Mono(2-hydroxyethyl) terephthalate hydrolase

Related Entries With Identical Sequence