- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- hetero-12-12-12-mer
- Ligands
- 48 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 12 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.4: 11 residues within 4Å:- Chain A: C.174, C.176, Y.180, R.214, K.219
- Chain J: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.49
2 PLIP interactions:2 interactions with chain A,- Metal complexes: A:C.174, A:C.176
FES.19: 11 residues within 4Å:- Chain D: C.174, C.176, Y.180, R.214, K.219
- Chain V: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.109
2 PLIP interactions:2 interactions with chain D,- Metal complexes: D:C.174, D:C.176
FES.34: 11 residues within 4Å:- Chain 7: C.174, C.176, Y.180, R.214, K.219
- Chain G: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.169
2 PLIP interactions:2 interactions with chain G,- Metal complexes: G:C.174, G:C.176
FES.49: 11 residues within 4Å:- Chain A: C.174, C.176, Y.180, R.214, K.219
- Chain J: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.4
2 PLIP interactions:2 interactions with chain J,- Metal complexes: J:C.174, J:C.176
FES.64: 11 residues within 4Å:- Chain 4: C.174, C.176, Y.180, R.214, K.219
- Chain M: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.154
2 PLIP interactions:2 interactions with chain M,- Metal complexes: M:C.174, M:C.176
FES.79: 11 residues within 4Å:- Chain P: C.174, C.176, Y.180, R.214, K.219
- Chain Y: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.124
2 PLIP interactions:2 interactions with chain P,- Metal complexes: P:C.174, P:C.176
FES.94: 11 residues within 4Å:- Chain 1: C.174, C.176, Y.180, R.214, K.219
- Chain S: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.139
2 PLIP interactions:2 interactions with chain S,- Metal complexes: S:C.174, S:C.176
FES.109: 11 residues within 4Å:- Chain D: C.174, C.176, Y.180, R.214, K.219
- Chain V: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.19
2 PLIP interactions:2 interactions with chain V,- Metal complexes: V:C.174, V:C.176
FES.124: 11 residues within 4Å:- Chain P: C.174, C.176, Y.180, R.214, K.219
- Chain Y: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.79
2 PLIP interactions:2 interactions with chain Y,- Metal complexes: Y:C.174, Y:C.176
FES.139: 11 residues within 4Å:- Chain 1: C.174, C.176, Y.180, R.214, K.219
- Chain S: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.94
2 PLIP interactions:2 interactions with chain 1,- Metal complexes: 1:C.174, 1:C.176
FES.154: 11 residues within 4Å:- Chain 4: C.174, C.176, Y.180, R.214, K.219
- Chain M: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.64
2 PLIP interactions:2 interactions with chain 4,- Metal complexes: 4:C.174, 4:C.176
FES.169: 11 residues within 4Å:- Chain 7: C.174, C.176, Y.180, R.214, K.219
- Chain G: C.174, C.176, Y.180, R.214, K.219
- Ligands: FES.34
2 PLIP interactions:2 interactions with chain 7,- Metal complexes: 7:C.174, 7:C.176
- 24 x 144: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM(Non-covalent)
144.5: 8 residues within 4Å:- Chain A: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain B: P.9, H.16
Ligand excluded by PLIP144.11: 14 residues within 4Å:- Chain 8: N.322, F.323, D.324
- Chain B: N.322, F.323, D.324
- Chain N: N.322, F.323, D.324
- Ligands: MG.10, MG.70, 144.71, MG.175, 144.176
Ligand excluded by PLIP144.20: 8 residues within 4Å:- Chain D: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain E: P.9, H.16
Ligand excluded by PLIP144.26: 14 residues within 4Å:- Chain E: N.322, F.323, D.324
- Chain K: N.322, F.323, D.324
- Chain Z: N.322, F.323, D.324
- Ligands: MG.25, MG.55, 144.56, MG.130, 144.131
Ligand excluded by PLIP144.35: 8 residues within 4Å:- Chain G: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain H: P.9, H.16
Ligand excluded by PLIP144.41: 14 residues within 4Å:- Chain 2: N.322, F.323, D.324
- Chain H: N.322, F.323, D.324
- Chain W: N.322, F.323, D.324
- Ligands: MG.40, MG.115, 144.116, MG.145, 144.146
Ligand excluded by PLIP144.50: 8 residues within 4Å:- Chain J: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain K: P.9, H.16
Ligand excluded by PLIP144.56: 14 residues within 4Å:- Chain E: N.322, F.323, D.324
- Chain K: N.322, F.323, D.324
- Chain Z: N.322, F.323, D.324
- Ligands: MG.25, 144.26, MG.55, MG.130, 144.131
Ligand excluded by PLIP144.65: 8 residues within 4Å:- Chain M: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain N: P.9, H.16
Ligand excluded by PLIP144.71: 14 residues within 4Å:- Chain 8: N.322, F.323, D.324
- Chain B: N.322, F.323, D.324
- Chain N: N.322, F.323, D.324
- Ligands: MG.10, 144.11, MG.70, MG.175, 144.176
Ligand excluded by PLIP144.80: 8 residues within 4Å:- Chain P: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain Q: P.9, H.16
Ligand excluded by PLIP144.86: 14 residues within 4Å:- Chain 5: N.322, F.323, D.324
- Chain Q: N.322, F.323, D.324
- Chain T: N.322, F.323, D.324
- Ligands: MG.85, MG.100, 144.101, MG.160, 144.161
Ligand excluded by PLIP144.95: 8 residues within 4Å:- Chain S: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain T: P.9, H.16
Ligand excluded by PLIP144.101: 14 residues within 4Å:- Chain 5: N.322, F.323, D.324
- Chain Q: N.322, F.323, D.324
- Chain T: N.322, F.323, D.324
- Ligands: MG.85, 144.86, MG.100, MG.160, 144.161
Ligand excluded by PLIP144.110: 8 residues within 4Å:- Chain V: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain W: P.9, H.16
Ligand excluded by PLIP144.116: 14 residues within 4Å:- Chain 2: N.322, F.323, D.324
- Chain H: N.322, F.323, D.324
- Chain W: N.322, F.323, D.324
- Ligands: MG.40, 144.41, MG.115, MG.145, 144.146
Ligand excluded by PLIP144.125: 8 residues within 4Å:- Chain Y: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain Z: P.9, H.16
Ligand excluded by PLIP144.131: 14 residues within 4Å:- Chain E: N.322, F.323, D.324
- Chain K: N.322, F.323, D.324
- Chain Z: N.322, F.323, D.324
- Ligands: MG.25, 144.26, MG.55, 144.56, MG.130
Ligand excluded by PLIP144.140: 8 residues within 4Å:- Chain 1: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain 2: P.9, H.16
Ligand excluded by PLIP144.146: 14 residues within 4Å:- Chain 2: N.322, F.323, D.324
- Chain H: N.322, F.323, D.324
- Chain W: N.322, F.323, D.324
- Ligands: MG.40, 144.41, MG.115, 144.116, MG.145
Ligand excluded by PLIP144.155: 8 residues within 4Å:- Chain 4: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain 5: P.9, H.16
Ligand excluded by PLIP144.161: 14 residues within 4Å:- Chain 5: N.322, F.323, D.324
- Chain Q: N.322, F.323, D.324
- Chain T: N.322, F.323, D.324
- Ligands: MG.85, 144.86, MG.100, 144.101, MG.160
Ligand excluded by PLIP144.170: 8 residues within 4Å:- Chain 7: Y.40, R.48, H.49, I.50, E.68, D.72
- Chain 8: P.9, H.16
Ligand excluded by PLIP144.176: 14 residues within 4Å:- Chain 8: N.322, F.323, D.324
- Chain B: N.322, F.323, D.324
- Chain N: N.322, F.323, D.324
- Ligands: MG.10, 144.11, MG.70, 144.71, MG.175
Ligand excluded by PLIP- 36 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)
BU3.6: 5 residues within 4Å:- Chain A: R.136, N.137, S.244
- Chain C: Q.117, P.127
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:R.136, A:N.137, C:Q.117
- Hydrophobic interactions: C:P.127
BU3.7: 4 residues within 4Å:- Chain A: D.23, N.24, E.133
- Chain C: D.125
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.133
- Water bridges: A:N.25
BU3.13: 6 residues within 4Å:- Chain A: A.195, H.201
- Chain B: H.173
- Chain C: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:E.91
- Hydrogen bonds: A:H.201
BU3.21: 5 residues within 4Å:- Chain D: R.136, N.137, S.244
- Chain F: Q.117, P.127
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain F- Hydrogen bonds: D:R.136, D:N.137, F:Q.117
- Hydrophobic interactions: F:P.127
BU3.22: 4 residues within 4Å:- Chain D: D.23, N.24, E.133
- Chain F: D.125
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.133
- Water bridges: D:N.25
BU3.28: 6 residues within 4Å:- Chain D: A.195, H.201
- Chain E: H.173
- Chain F: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:H.201
- Hydrophobic interactions: F:E.91
BU3.36: 5 residues within 4Å:- Chain G: R.136, N.137, S.244
- Chain I: Q.117, P.127
4 PLIP interactions:2 interactions with chain I, 2 interactions with chain G- Hydrophobic interactions: I:P.127
- Hydrogen bonds: I:Q.117, G:R.136, G:N.137
BU3.37: 4 residues within 4Å:- Chain G: D.23, N.24, E.133
- Chain I: D.125
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:E.133
- Water bridges: G:N.25
BU3.43: 6 residues within 4Å:- Chain G: A.195, H.201
- Chain H: H.173
- Chain I: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain I- Hydrogen bonds: G:H.201
- Hydrophobic interactions: I:E.91
BU3.51: 5 residues within 4Å:- Chain J: R.136, N.137, S.244
- Chain L: Q.117, P.127
4 PLIP interactions:2 interactions with chain L, 2 interactions with chain J- Hydrophobic interactions: L:P.127
- Hydrogen bonds: L:Q.117, J:R.136, J:N.137
BU3.52: 4 residues within 4Å:- Chain J: D.23, N.24, E.133
- Chain L: D.125
2 PLIP interactions:2 interactions with chain J- Hydrogen bonds: J:E.133
- Water bridges: J:N.25
BU3.58: 6 residues within 4Å:- Chain J: A.195, H.201
- Chain K: H.173
- Chain L: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain L, 1 interactions with chain J- Hydrophobic interactions: L:E.91
- Hydrogen bonds: J:H.201
BU3.66: 5 residues within 4Å:- Chain M: R.136, N.137, S.244
- Chain O: Q.117, P.127
4 PLIP interactions:2 interactions with chain O, 2 interactions with chain M- Hydrophobic interactions: O:P.127
- Hydrogen bonds: O:Q.117, M:R.136, M:N.137
BU3.67: 4 residues within 4Å:- Chain M: D.23, N.24, E.133
- Chain O: D.125
2 PLIP interactions:2 interactions with chain M- Hydrogen bonds: M:E.133
- Water bridges: M:N.25
BU3.73: 6 residues within 4Å:- Chain M: A.195, H.201
- Chain N: H.173
- Chain O: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain M, 1 interactions with chain O- Hydrogen bonds: M:H.201
- Hydrophobic interactions: O:E.91
BU3.81: 5 residues within 4Å:- Chain P: R.136, N.137, S.244
- Chain R: Q.117, P.127
4 PLIP interactions:2 interactions with chain R, 2 interactions with chain P- Hydrophobic interactions: R:P.127
- Hydrogen bonds: R:Q.117, P:R.136, P:N.137
BU3.82: 4 residues within 4Å:- Chain P: D.23, N.24, E.133
- Chain R: D.125
2 PLIP interactions:2 interactions with chain P- Hydrogen bonds: P:E.133
- Water bridges: P:N.25
BU3.88: 6 residues within 4Å:- Chain P: A.195, H.201
- Chain Q: H.173
- Chain R: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain R, 1 interactions with chain P- Hydrophobic interactions: R:E.91
- Hydrogen bonds: P:H.201
BU3.96: 5 residues within 4Å:- Chain S: R.136, N.137, S.244
- Chain U: Q.117, P.127
4 PLIP interactions:2 interactions with chain S, 2 interactions with chain U- Hydrogen bonds: S:R.136, S:N.137, U:Q.117
- Hydrophobic interactions: U:P.127
BU3.97: 4 residues within 4Å:- Chain S: D.23, N.24, E.133
- Chain U: D.125
2 PLIP interactions:2 interactions with chain S- Hydrogen bonds: S:E.133
- Water bridges: S:N.25
BU3.103: 6 residues within 4Å:- Chain S: A.195, H.201
- Chain T: H.173
- Chain U: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain S, 1 interactions with chain U- Hydrogen bonds: S:H.201
- Hydrophobic interactions: U:E.91
BU3.111: 5 residues within 4Å:- Chain V: R.136, N.137, S.244
- Chain X: Q.117, P.127
4 PLIP interactions:2 interactions with chain V, 2 interactions with chain X- Hydrogen bonds: V:R.136, V:N.137, X:Q.117
- Hydrophobic interactions: X:P.127
BU3.112: 4 residues within 4Å:- Chain V: D.23, N.24, E.133
- Chain X: D.125
2 PLIP interactions:2 interactions with chain V- Hydrogen bonds: V:E.133
- Water bridges: V:N.25
BU3.118: 6 residues within 4Å:- Chain V: A.195, H.201
- Chain W: H.173
- Chain X: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain X, 1 interactions with chain V- Hydrophobic interactions: X:E.91
- Hydrogen bonds: V:H.201
BU3.126: 5 residues within 4Å:- Chain 0: Q.117, P.127
- Chain Y: R.136, N.137, S.244
4 PLIP interactions:2 interactions with chain Y, 2 interactions with chain 0- Hydrogen bonds: Y:R.136, Y:N.137, 0:Q.117
- Hydrophobic interactions: 0:P.127
BU3.127: 4 residues within 4Å:- Chain 0: D.125
- Chain Y: D.23, N.24, E.133
2 PLIP interactions:2 interactions with chain Y- Hydrogen bonds: Y:E.133
- Water bridges: Y:N.25
BU3.133: 6 residues within 4Å:- Chain 0: S.87, W.88, E.91
- Chain Y: A.195, H.201
- Chain Z: H.173
2 PLIP interactions:1 interactions with chain 0, 1 interactions with chain Y- Hydrophobic interactions: 0:E.91
- Hydrogen bonds: Y:H.201
BU3.141: 5 residues within 4Å:- Chain 1: R.136, N.137, S.244
- Chain 3: Q.117, P.127
4 PLIP interactions:2 interactions with chain 1, 2 interactions with chain 3- Hydrogen bonds: 1:R.136, 1:N.137, 3:Q.117
- Hydrophobic interactions: 3:P.127
BU3.142: 4 residues within 4Å:- Chain 1: D.23, N.24, E.133
- Chain 3: D.125
2 PLIP interactions:2 interactions with chain 1- Hydrogen bonds: 1:E.133
- Water bridges: 1:N.25
BU3.148: 6 residues within 4Å:- Chain 1: A.195, H.201
- Chain 2: H.173
- Chain 3: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain 3, 1 interactions with chain 1- Hydrophobic interactions: 3:E.91
- Hydrogen bonds: 1:H.201
BU3.156: 5 residues within 4Å:- Chain 4: R.136, N.137, S.244
- Chain 6: Q.117, P.127
4 PLIP interactions:2 interactions with chain 6, 2 interactions with chain 4- Hydrophobic interactions: 6:P.127
- Hydrogen bonds: 6:Q.117, 4:R.136, 4:N.137
BU3.157: 4 residues within 4Å:- Chain 4: D.23, N.24, E.133
- Chain 6: D.125
2 PLIP interactions:2 interactions with chain 4- Hydrogen bonds: 4:E.133
- Water bridges: 4:N.25
BU3.163: 6 residues within 4Å:- Chain 4: A.195, H.201
- Chain 5: H.173
- Chain 6: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain 6, 1 interactions with chain 4- Hydrophobic interactions: 6:E.91
- Hydrogen bonds: 4:H.201
BU3.171: 5 residues within 4Å:- Chain 7: R.136, N.137, S.244
- Chain 9: Q.117, P.127
4 PLIP interactions:2 interactions with chain 9, 2 interactions with chain 7- Hydrophobic interactions: 9:P.127
- Hydrogen bonds: 9:Q.117, 7:R.136, 7:N.137
BU3.172: 4 residues within 4Å:- Chain 7: D.23, N.24, E.133
- Chain 9: D.125
2 PLIP interactions:2 interactions with chain 7- Hydrogen bonds: 7:E.133
- Water bridges: 7:N.25
BU3.178: 6 residues within 4Å:- Chain 7: A.195, H.201
- Chain 8: H.173
- Chain 9: S.87, W.88, E.91
2 PLIP interactions:1 interactions with chain 7, 1 interactions with chain 9- Hydrogen bonds: 7:H.201
- Hydrophobic interactions: 9:E.91
- 12 x J52: dicyano-(oxidaniumylidynemethylnickelio)-(oxidanylidenemethylidene)iron(Non-covalent)
J52.8: 14 residues within 4Å:- Chain B: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
10 PLIP interactions:9 interactions with chain B, 1 Ligand-Ligand interactions- Hydrogen bonds: B:R.380, B:R.380, B:T.403
- Metal complexes: B:C.63, B:C.66, B:C.66, B:C.432, B:C.435, B:C.435, J52.8
J52.23: 14 residues within 4Å:- Chain E: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
11 PLIP interactions:10 interactions with chain E, 1 Ligand-Ligand interactions- Hydrogen bonds: E:R.380, E:R.380, E:T.403, E:T.403
- Metal complexes: E:C.63, E:C.66, E:C.66, E:C.432, E:C.435, E:C.435, J52.23
J52.38: 14 residues within 4Å:- Chain H: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
10 PLIP interactions:9 interactions with chain H, 1 Ligand-Ligand interactions- Hydrogen bonds: H:R.380, H:R.380, H:T.403
- Metal complexes: H:C.63, H:C.66, H:C.66, H:C.432, H:C.435, H:C.435, J52.38
J52.53: 14 residues within 4Å:- Chain K: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
11 PLIP interactions:10 interactions with chain K, 1 Ligand-Ligand interactions- Hydrogen bonds: K:R.380, K:R.380, K:T.403, K:T.403
- Metal complexes: K:C.63, K:C.66, K:C.66, K:C.432, K:C.435, K:C.435, J52.53
J52.68: 14 residues within 4Å:- Chain N: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
10 PLIP interactions:9 interactions with chain N, 1 Ligand-Ligand interactions- Hydrogen bonds: N:R.380, N:R.380, N:T.403
- Metal complexes: N:C.63, N:C.66, N:C.66, N:C.432, N:C.435, N:C.435, J52.68
J52.83: 14 residues within 4Å:- Chain Q: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
11 PLIP interactions:10 interactions with chain Q, 1 Ligand-Ligand interactions- Hydrogen bonds: Q:R.380, Q:R.380, Q:T.403, Q:T.403
- Metal complexes: Q:C.63, Q:C.66, Q:C.66, Q:C.432, Q:C.435, Q:C.435, J52.83
J52.98: 14 residues within 4Å:- Chain T: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
11 PLIP interactions:10 interactions with chain T, 1 Ligand-Ligand interactions- Hydrogen bonds: T:R.380, T:R.380, T:T.403, T:T.403
- Metal complexes: T:C.63, T:C.66, T:C.66, T:C.432, T:C.435, T:C.435, J52.98
J52.113: 14 residues within 4Å:- Chain W: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
10 PLIP interactions:9 interactions with chain W, 1 Ligand-Ligand interactions- Hydrogen bonds: W:R.380, W:R.380, W:T.403
- Metal complexes: W:C.63, W:C.66, W:C.66, W:C.432, W:C.435, W:C.435, J52.113
J52.128: 14 residues within 4Å:- Chain Z: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
11 PLIP interactions:10 interactions with chain Z, 1 Ligand-Ligand interactions- Hydrogen bonds: Z:R.380, Z:R.380, Z:T.403, Z:T.403
- Metal complexes: Z:C.63, Z:C.66, Z:C.66, Z:C.432, Z:C.435, Z:C.435, J52.128
J52.143: 14 residues within 4Å:- Chain 2: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
10 PLIP interactions:9 interactions with chain 2, 1 Ligand-Ligand interactions- Hydrogen bonds: 2:R.380, 2:R.380, 2:T.403
- Metal complexes: 2:C.63, 2:C.66, 2:C.66, 2:C.432, 2:C.435, 2:C.435, J52.143
J52.158: 14 residues within 4Å:- Chain 5: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
11 PLIP interactions:10 interactions with chain 5, 1 Ligand-Ligand interactions- Hydrogen bonds: 5:R.380, 5:R.380, 5:T.403, 5:T.403
- Metal complexes: 5:C.63, 5:C.66, 5:C.66, 5:C.432, 5:C.435, 5:C.435, J52.158
J52.173: 14 residues within 4Å:- Chain 8: C.63, I.65, C.66, A.69, H.70, A.378, P.379, R.380, N.383, V.401, P.402, T.403, C.432, C.435
10 PLIP interactions:9 interactions with chain 8, 1 Ligand-Ligand interactions- Hydrogen bonds: 8:R.380, 8:R.380, 8:T.403
- Metal complexes: 8:C.63, 8:C.66, 8:C.66, 8:C.432, 8:C.435, 8:C.435, J52.173
- 12 x FE: FE (III) ION(Non-covalent)
FE.9: 3 residues within 4Å:- Chain B: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.44, B:M.399, B:H.438, H2O.5, H2O.5, H2O.5
FE.24: 3 residues within 4Å:- Chain E: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain E, 3 Ligand-Water interactions- Metal complexes: E:E.44, E:M.399, E:H.438, H2O.24, H2O.24, H2O.24
FE.39: 3 residues within 4Å:- Chain H: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain H, 3 Ligand-Water interactions- Metal complexes: H:E.44, H:M.399, H:H.438, H2O.42, H2O.42, H2O.43
FE.54: 3 residues within 4Å:- Chain K: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain K, 3 Ligand-Water interactions- Metal complexes: K:E.44, K:M.399, K:H.438, H2O.61, H2O.61, H2O.62
FE.69: 3 residues within 4Å:- Chain N: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain N, 3 Ligand-Water interactions- Metal complexes: N:E.44, N:M.399, N:H.438, H2O.80, H2O.80, H2O.80
FE.84: 3 residues within 4Å:- Chain Q: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain Q, 3 Ligand-Water interactions- Metal complexes: Q:E.44, Q:M.399, Q:H.438, H2O.98, H2O.98, H2O.99
FE.99: 3 residues within 4Å:- Chain T: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain T, 3 Ligand-Water interactions- Metal complexes: T:E.44, T:M.399, T:H.438, H2O.117, H2O.117, H2O.118
FE.114: 3 residues within 4Å:- Chain W: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain W, 3 Ligand-Water interactions- Metal complexes: W:E.44, W:M.399, W:H.438, H2O.136, H2O.136, H2O.136
FE.129: 3 residues within 4Å:- Chain Z: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain Z, 3 Ligand-Water interactions- Metal complexes: Z:E.44, Z:M.399, Z:H.438, H2O.154, H2O.155, H2O.155
FE.144: 3 residues within 4Å:- Chain 2: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain 2, 3 Ligand-Water interactions- Metal complexes: 2:E.44, 2:M.399, 2:H.438, H2O.173, H2O.173, H2O.174
FE.159: 3 residues within 4Å:- Chain 5: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain 5, 3 Ligand-Water interactions- Metal complexes: 5:E.44, 5:M.399, 5:H.438, H2O.192, H2O.192, H2O.192
FE.174: 3 residues within 4Å:- Chain 8: E.44, M.399, H.438
6 PLIP interactions:3 interactions with chain 8, 3 Ligand-Water interactions- Metal complexes: 8:E.44, 8:M.399, 8:H.438, H2O.211, H2O.211, H2O.211
- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.10: 8 residues within 4Å:- Chain 8: N.322
- Chain B: N.322
- Chain N: N.322
- Ligands: 144.11, MG.70, 144.71, MG.175, 144.176
No protein-ligand interaction detected (PLIP)MG.25: 8 residues within 4Å:- Chain E: N.322
- Chain K: N.322
- Chain Z: N.322
- Ligands: 144.26, MG.55, 144.56, MG.130, 144.131
No protein-ligand interaction detected (PLIP)MG.40: 8 residues within 4Å:- Chain 2: N.322
- Chain H: N.322
- Chain W: N.322
- Ligands: 144.41, MG.115, 144.116, MG.145, 144.146
No protein-ligand interaction detected (PLIP)MG.55: 8 residues within 4Å:- Chain E: N.322
- Chain K: N.322
- Chain Z: N.322
- Ligands: MG.25, 144.26, 144.56, MG.130, 144.131
No protein-ligand interaction detected (PLIP)MG.70: 8 residues within 4Å:- Chain 8: N.322
- Chain B: N.322
- Chain N: N.322
- Ligands: MG.10, 144.11, 144.71, MG.175, 144.176
No protein-ligand interaction detected (PLIP)MG.85: 8 residues within 4Å:- Chain 5: N.322
- Chain Q: N.322
- Chain T: N.322
- Ligands: 144.86, MG.100, 144.101, MG.160, 144.161
No protein-ligand interaction detected (PLIP)MG.100: 8 residues within 4Å:- Chain 5: N.322
- Chain Q: N.322
- Chain T: N.322
- Ligands: MG.85, 144.86, 144.101, MG.160, 144.161
No protein-ligand interaction detected (PLIP)MG.115: 8 residues within 4Å:- Chain 2: N.322
- Chain H: N.322
- Chain W: N.322
- Ligands: MG.40, 144.41, 144.116, MG.145, 144.146
No protein-ligand interaction detected (PLIP)MG.130: 8 residues within 4Å:- Chain E: N.322
- Chain K: N.322
- Chain Z: N.322
- Ligands: MG.25, 144.26, MG.55, 144.56, 144.131
No protein-ligand interaction detected (PLIP)MG.145: 8 residues within 4Å:- Chain 2: N.322
- Chain H: N.322
- Chain W: N.322
- Ligands: MG.40, 144.41, MG.115, 144.116, 144.146
No protein-ligand interaction detected (PLIP)MG.160: 8 residues within 4Å:- Chain 5: N.322
- Chain Q: N.322
- Chain T: N.322
- Ligands: MG.85, 144.86, MG.100, 144.101, 144.161
No protein-ligand interaction detected (PLIP)MG.175: 8 residues within 4Å:- Chain 8: N.322
- Chain B: N.322
- Chain N: N.322
- Ligands: MG.10, 144.11, MG.70, 144.71, 144.176
No protein-ligand interaction detected (PLIP)- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.12: 7 residues within 4Å:- Chain A: A.22, L.28, I.29
- Chain B: I.111, L.128, F.129, M.139
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:I.111, B:L.128, B:F.129, B:F.129, A:A.22
MPD.27: 7 residues within 4Å:- Chain D: A.22, L.28, I.29
- Chain E: I.111, L.128, F.129, M.139
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain E- Hydrophobic interactions: D:A.22, E:I.111, E:L.128, E:F.129, E:F.129
MPD.42: 7 residues within 4Å:- Chain G: A.22, L.28, I.29
- Chain H: I.111, L.128, F.129, M.139
5 PLIP interactions:4 interactions with chain H, 1 interactions with chain G- Hydrophobic interactions: H:I.111, H:L.128, H:F.129, H:F.129, G:A.22
MPD.57: 7 residues within 4Å:- Chain J: A.22, L.28, I.29
- Chain K: I.111, L.128, F.129, M.139
5 PLIP interactions:1 interactions with chain J, 4 interactions with chain K- Hydrophobic interactions: J:A.22, K:I.111, K:L.128, K:F.129, K:F.129
MPD.72: 7 residues within 4Å:- Chain M: A.22, L.28, I.29
- Chain N: I.111, L.128, F.129, M.139
5 PLIP interactions:1 interactions with chain M, 4 interactions with chain N- Hydrophobic interactions: M:A.22, N:I.111, N:L.128, N:F.129, N:F.129
MPD.87: 7 residues within 4Å:- Chain P: A.22, L.28, I.29
- Chain Q: I.111, L.128, F.129, M.139
5 PLIP interactions:4 interactions with chain Q, 1 interactions with chain P- Hydrophobic interactions: Q:I.111, Q:L.128, Q:F.129, Q:F.129, P:A.22
MPD.102: 7 residues within 4Å:- Chain S: A.22, L.28, I.29
- Chain T: I.111, L.128, F.129, M.139
5 PLIP interactions:4 interactions with chain T, 1 interactions with chain S- Hydrophobic interactions: T:I.111, T:L.128, T:F.129, T:F.129, S:A.22
MPD.117: 7 residues within 4Å:- Chain V: A.22, L.28, I.29
- Chain W: I.111, L.128, F.129, M.139
5 PLIP interactions:1 interactions with chain V, 4 interactions with chain W- Hydrophobic interactions: V:A.22, W:I.111, W:L.128, W:F.129, W:F.129
MPD.132: 7 residues within 4Å:- Chain Y: A.22, L.28, I.29
- Chain Z: I.111, L.128, F.129, M.139
5 PLIP interactions:1 interactions with chain Y, 4 interactions with chain Z- Hydrophobic interactions: Y:A.22, Z:I.111, Z:L.128, Z:F.129, Z:F.129
MPD.147: 7 residues within 4Å:- Chain 1: A.22, L.28, I.29
- Chain 2: I.111, L.128, F.129, M.139
5 PLIP interactions:4 interactions with chain 2, 1 interactions with chain 1- Hydrophobic interactions: 2:I.111, 2:L.128, 2:F.129, 2:F.129, 1:A.22
MPD.162: 7 residues within 4Å:- Chain 4: A.22, L.28, I.29
- Chain 5: I.111, L.128, F.129, M.139
5 PLIP interactions:4 interactions with chain 5, 1 interactions with chain 4- Hydrophobic interactions: 5:I.111, 5:L.128, 5:F.129, 5:F.129, 4:A.22
MPD.177: 7 residues within 4Å:- Chain 7: A.22, L.28, I.29
- Chain 8: I.111, L.128, F.129, M.139
5 PLIP interactions:4 interactions with chain 8, 1 interactions with chain 7- Hydrophobic interactions: 8:I.111, 8:L.128, 8:F.129, 8:F.129, 7:A.22
- 12 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.14: 33 residues within 4Å:- Chain C: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
32 PLIP interactions:32 interactions with chain C- Hydrophobic interactions: C:T.78, C:Y.80, C:V.106, C:L.136, C:N.141
- Hydrogen bonds: C:Q.28, C:D.29, C:G.31, C:I.32, C:A.33, C:T.34, C:T.34, C:A.52, C:G.77, C:T.78, C:R.79, C:R.79, C:R.79, C:Y.80, C:Y.80, C:Q.85, C:T.104, C:M.139, C:Y.203, C:S.214, C:V.215
- Water bridges: C:Q.28, C:A.33, C:S.83, C:N.141, C:S.222
- pi-Stacking: C:Y.80
FAD.29: 33 residues within 4Å:- Chain F: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
33 PLIP interactions:33 interactions with chain F- Hydrophobic interactions: F:T.78, F:Y.80, F:V.106, F:L.136, F:N.141
- Hydrogen bonds: F:Q.28, F:D.29, F:D.29, F:G.31, F:I.32, F:A.33, F:T.34, F:T.34, F:A.52, F:G.77, F:T.78, F:T.78, F:R.79, F:R.79, F:R.79, F:Y.80, F:Q.85, F:T.104, F:M.139, F:Y.203, F:S.214, F:V.215
- Water bridges: F:Q.28, F:A.33, F:S.83, F:N.141, F:S.222
- pi-Stacking: F:Y.80
FAD.44: 33 residues within 4Å:- Chain I: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
33 PLIP interactions:33 interactions with chain I- Hydrophobic interactions: I:T.78, I:Y.80, I:V.106, I:L.136, I:N.141
- Hydrogen bonds: I:Q.28, I:D.29, I:G.31, I:I.32, I:A.33, I:T.34, I:T.34, I:T.34, I:A.52, I:G.77, I:T.78, I:T.78, I:R.79, I:R.79, I:R.79, I:Y.80, I:Y.80, I:Q.85, I:M.139, I:Y.203, I:S.214, I:V.215
- Water bridges: I:Q.28, I:A.33, I:S.83, I:N.141, I:S.222
- pi-Stacking: I:Y.80
FAD.59: 33 residues within 4Å:- Chain L: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
34 PLIP interactions:34 interactions with chain L- Hydrophobic interactions: L:T.78, L:Y.80, L:V.106, L:L.136, L:N.141
- Hydrogen bonds: L:Q.28, L:D.29, L:D.29, L:G.31, L:I.32, L:A.33, L:T.34, L:T.34, L:T.34, L:A.52, L:G.77, L:T.78, L:T.78, L:R.79, L:R.79, L:R.79, L:Y.80, L:Q.85, L:M.139, L:Y.203, L:Y.203, L:S.214, L:V.215
- Water bridges: L:Q.28, L:A.33, L:S.83, L:N.141, L:S.222
- pi-Stacking: L:Y.80
FAD.74: 33 residues within 4Å:- Chain O: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
33 PLIP interactions:33 interactions with chain O- Hydrophobic interactions: O:T.78, O:Y.80, O:V.106, O:L.136, O:N.141
- Hydrogen bonds: O:Q.28, O:D.29, O:G.31, O:I.32, O:A.33, O:T.34, O:T.34, O:T.34, O:A.52, O:G.77, O:T.78, O:R.79, O:R.79, O:R.79, O:Y.80, O:Y.80, O:Q.85, O:M.139, O:Y.203, O:Y.203, O:S.214, O:V.215
- Water bridges: O:Q.28, O:A.33, O:S.83, O:N.141, O:S.222
- pi-Stacking: O:Y.80
FAD.89: 33 residues within 4Å:- Chain R: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
33 PLIP interactions:33 interactions with chain R- Hydrophobic interactions: R:T.78, R:Y.80, R:V.106, R:L.136, R:N.141
- Hydrogen bonds: R:Q.28, R:D.29, R:D.29, R:G.31, R:I.32, R:A.33, R:T.34, R:T.34, R:A.52, R:G.77, R:T.78, R:R.79, R:R.79, R:R.79, R:Y.80, R:Q.85, R:T.104, R:M.139, R:Y.203, R:Y.203, R:S.214, R:V.215
- Water bridges: R:Q.28, R:A.33, R:S.83, R:N.141, R:S.222
- pi-Stacking: R:Y.80
FAD.104: 33 residues within 4Å:- Chain U: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
34 PLIP interactions:34 interactions with chain U- Hydrophobic interactions: U:T.78, U:Y.80, U:V.106, U:L.136, U:N.141
- Hydrogen bonds: U:Q.28, U:D.29, U:D.29, U:G.31, U:I.32, U:A.33, U:T.34, U:T.34, U:T.34, U:A.52, U:G.77, U:T.78, U:T.78, U:R.79, U:R.79, U:R.79, U:Y.80, U:Q.85, U:M.139, U:Y.203, U:Y.203, U:S.214, U:V.215
- Water bridges: U:Q.28, U:A.33, U:S.83, U:N.141, U:S.222
- pi-Stacking: U:Y.80
FAD.119: 33 residues within 4Å:- Chain X: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
33 PLIP interactions:33 interactions with chain X- Hydrophobic interactions: X:T.78, X:Y.80, X:V.106, X:L.136, X:N.141
- Hydrogen bonds: X:Q.28, X:D.29, X:G.31, X:I.32, X:A.33, X:T.34, X:T.34, X:T.34, X:A.52, X:G.77, X:T.78, X:R.79, X:R.79, X:R.79, X:Y.80, X:Y.80, X:Q.85, X:M.139, X:Y.203, X:Y.203, X:S.214, X:V.215
- Water bridges: X:Q.28, X:A.33, X:S.83, X:N.141, X:S.222
- pi-Stacking: X:Y.80
FAD.134: 33 residues within 4Å:- Chain 0: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
33 PLIP interactions:33 interactions with chain 0- Hydrophobic interactions: 0:T.78, 0:Y.80, 0:V.106, 0:L.136, 0:N.141
- Hydrogen bonds: 0:Q.28, 0:D.29, 0:D.29, 0:G.31, 0:I.32, 0:A.33, 0:T.34, 0:T.34, 0:A.52, 0:G.77, 0:T.78, 0:R.79, 0:R.79, 0:R.79, 0:Y.80, 0:Q.85, 0:T.104, 0:M.139, 0:Y.203, 0:Y.203, 0:S.214, 0:V.215
- Water bridges: 0:Q.28, 0:A.33, 0:S.83, 0:N.141, 0:S.222
- pi-Stacking: 0:Y.80
FAD.149: 33 residues within 4Å:- Chain 3: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
32 PLIP interactions:32 interactions with chain 3- Hydrophobic interactions: 3:T.78, 3:Y.80, 3:V.106, 3:L.136, 3:N.141
- Hydrogen bonds: 3:Q.28, 3:D.29, 3:G.31, 3:I.32, 3:A.33, 3:T.34, 3:T.34, 3:A.52, 3:G.77, 3:T.78, 3:R.79, 3:R.79, 3:R.79, 3:Y.80, 3:Y.80, 3:Q.85, 3:T.104, 3:M.139, 3:Y.203, 3:S.214, 3:V.215
- Water bridges: 3:Q.28, 3:A.33, 3:S.83, 3:N.141, 3:S.222
- pi-Stacking: 3:Y.80
FAD.164: 33 residues within 4Å:- Chain 6: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
33 PLIP interactions:33 interactions with chain 6- Hydrophobic interactions: 6:T.78, 6:Y.80, 6:V.106, 6:L.136, 6:N.141
- Hydrogen bonds: 6:Q.28, 6:D.29, 6:D.29, 6:G.31, 6:I.32, 6:A.33, 6:T.34, 6:T.34, 6:A.52, 6:G.77, 6:T.78, 6:T.78, 6:R.79, 6:R.79, 6:R.79, 6:Y.80, 6:Q.85, 6:T.104, 6:M.139, 6:Y.203, 6:S.214, 6:V.215
- Water bridges: 6:Q.28, 6:A.33, 6:S.83, 6:N.141, 6:S.222
- pi-Stacking: 6:Y.80
FAD.179: 33 residues within 4Å:- Chain 9: A.27, Q.28, D.29, G.30, G.31, I.32, A.33, T.34, V.51, A.52, A.75, R.76, G.77, T.78, R.79, Y.80, N.81, S.83, Q.85, T.104, G.105, V.106, Q.109, L.136, F.137, C.138, M.139, E.140, N.141, Y.203, G.213, S.214, V.215
33 PLIP interactions:33 interactions with chain 9- Hydrophobic interactions: 9:T.78, 9:Y.80, 9:V.106, 9:L.136, 9:N.141
- Hydrogen bonds: 9:Q.28, 9:D.29, 9:G.31, 9:I.32, 9:A.33, 9:T.34, 9:T.34, 9:T.34, 9:A.52, 9:G.77, 9:T.78, 9:T.78, 9:R.79, 9:R.79, 9:R.79, 9:Y.80, 9:Y.80, 9:Q.85, 9:M.139, 9:Y.203, 9:S.214, 9:V.215
- Water bridges: 9:Q.28, 9:A.33, 9:S.83, 9:N.141, 9:S.222
- pi-Stacking: 9:Y.80
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ilina, Y. et al., X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases. Angew.Chem.Int.Ed.Engl. (2019)
- Release Date
- 2019-10-23
- Peptides
- Coenzyme F420 hydrogenase subunit gamma: ADGJMPSVY147
F420-reducing hydrogenase, subunit alpha: BEHKNQTWZ258
Coenzyme F420 hydrogenase subunit beta: CFILORUX0369 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GD
GG
GJ
GM
GP
GS
GV
GY
G1
G4
G7
GB
AE
AH
AK
AN
AQ
AT
AW
AZ
A2
A5
A8
AC
BF
BI
BL
BO
BR
BU
BX
B0
B3
B6
B9
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- hetero-12-12-12-mer
- Ligands
- 48 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 12 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 24 x 144: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM(Non-covalent)
- 36 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)
- 12 x J52: dicyano-(oxidaniumylidynemethylnickelio)-(oxidanylidenemethylidene)iron(Non-covalent)
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 12 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ilina, Y. et al., X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases. Angew.Chem.Int.Ed.Engl. (2019)
- Release Date
- 2019-10-23
- Peptides
- Coenzyme F420 hydrogenase subunit gamma: ADGJMPSVY147
F420-reducing hydrogenase, subunit alpha: BEHKNQTWZ258
Coenzyme F420 hydrogenase subunit beta: CFILORUX0369 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GD
GG
GJ
GM
GP
GS
GV
GY
G1
G4
G7
GB
AE
AH
AK
AN
AQ
AT
AW
AZ
A2
A5
A8
AC
BF
BI
BL
BO
BR
BU
BX
B0
B3
B6
B9
B