SMTL ID : 6qm7.1

Leishmania tarentolae proteasome 20S subunit complexed with GSK3494245

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 2.80 Å

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

2 x J6E: ~{N}-[4-fluoranyl-3-(3-morpholin-4-ylimidazo[1,2-a]pyrimidin-7-yl)phenyl]pyrrolidine-1-carboxamide(Non-covalent)

J6E.1: 19 residues within 4Å: Chain K: F.24, I.27, I.29 Chain L: T.100, S.120, G.122, G.146, S.195, M.196, G.197, Y.212, D.214, D.215, S.226, V.227, G.228, S.229, S.231 Chain X: L.32 10 PLIP interactions: 7 interactions with chain L, 3 interactions with chain K Hydrogen bonds: L:G.122, L:G.146, L:Y.212, L:Y.212, L:G.228, L:S.229 Halogen bonds: L:S.195 Hydrophobic interactions: K:F.24, K:F.24, K:I.29 J6E.2: 20 residues within 4Å: Chain J: L.32 Chain Y: F.24, I.27, I.29 Chain Z: T.100, S.120, G.122, G.146, S.195, M.196, G.197, Y.212, D.214, D.215, S.226, V.227, G.228, S.229, S.231, A.268 8 PLIP interactions: 5 interactions with chain Z, 3 interactions with chain Y Hydrogen bonds: Z:G.146, Z:Y.212, Z:G.228, Z:S.229 Halogen bonds: Z:S.195 Hydrophobic interactions: Y:F.24, Y:F.24, Y:I.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wyllie, S. et al., Preclinical candidate for the treatment of visceral leishmaniasis that acts through proteasome inhibition. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-04-17

Peptides

Proteasome alpha1 chain: AO
Proteasome alpha2 chain: BP
Proteasome alpha3 chain: CQ
Proteasome alpha4 chain: DR
Proteasome alpha5 chain: ES
Proteasome alpha6 chain: FT
Proteasome alpha7 chain: GU
Proteasome beta1 chain: HV
Proteasome beta2 chain: IW
Proteasome beta3 chain: JX
Proteasome beta4 chain: KY
Proteasome beta5 chain: LZ
Proteasome beta6 chain: M0
Proteasome beta7 chain: N1

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O
O

B
B

P
P

C
C

Q
Q

D
D

R
R

E
E

S
S

F
F

T
T

G
G

U
U

H
H

V
V

I
I

W
W

J
J

X
X

K
K

Y
Y

L
L

Z
Z

M
M

0
a

N
N

1
b

Proteasome alpha1 chain

Proteasome alpha2 chain

Proteasome alpha3 chain

Proteasome alpha4 chain

Proteasome alpha5 chain

Proteasome alpha6 chain

Proteasome alpha7 chain

Proteasome beta1 chain

Proteasome beta2 chain

Proteasome beta3 chain

Proteasome beta4 chain

Proteasome beta5 chain

Proteasome beta6 chain

Proteasome beta7 chain

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