SMTL ID : 6qo7.1

Crystal structure of ribonucleotide reductase NrdF from Bacillus anthracis aerobically soaked with ferrous ions (photo-reduced)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-dimer

Ligands

4 x FE2: FE (II) ION(Non-covalent)

FE2.1: 7 residues within 4Å: Chain A: Q.65, E.93, E.161, F.165, E.195, H.198 Ligands: FE2.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.93, A:E.161, A:E.161, A:E.195, A:H.198 FE2.2: 7 residues within 4Å: Chain A: D.62, E.93, H.96, F.165, I.191, E.195 Ligands: FE2.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.62, A:E.93, A:H.96, A:E.195, A:E.195 FE2.4: 7 residues within 4Å: Chain B: D.62, E.93, H.96, F.165, I.191, E.195 Ligands: FE2.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.62, B:E.93, B:H.96, B:E.195, B:E.195 FE2.5: 7 residues within 4Å: Chain B: Q.65, E.93, E.161, F.165, E.195, H.198 Ligands: FE2.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.93, B:E.161, B:E.161, B:E.195, B:H.198

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: T.146, K.147 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grave, K. et al., Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access. J.Biol.Inorg.Chem. (2019)

Release Date

2019-08-21

Peptides

Ribonucleoside-diphosphate reductase subunit beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribonucleoside-diphosphate reductase subunit beta

Related Entries With Identical Sequence