SMTL ID : 6qp0.1

Crystal structure of Chaetomium thermophilum Kti12 in complex with ADP-AlF3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: S.12, S.13, G.14, K.15, T.16, T.17, R.18, V.168, R.172, D.199, Y.203, W.233 Ligands: AF3.2, MG.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:S.12, A:S.13, A:G.14, A:K.15, A:T.16, A:T.17, A:T.17, A:R.172, A:W.233 Water bridges: A:R.85 Salt bridges: A:K.15, A:R.172, A:R.172 pi-Stacking: A:W.233, A:W.233, A:W.233, A:W.233

1 x AF3: ALUMINUM FLUORIDE(Non-covalent)

AF3.2: 11 residues within 4Å: Chain A: P.11, S.12, K.15, T.16, R.85, L.132, R.172, D.199, Y.203 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: K.15, T.16, D.130 Ligands: ADP.1, AF3.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.16, A:D.130, H2O.1

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 5 residues within 4Å: Chain A: P.220, M.221, T.222, R.223, S.226 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krutyholowa, R. et al., Kti12, a PSTK-like tRNA dependent ATPase essential for tRNA modification by Elongator. Nucleic Acids Res. (2019)

Release Date

2019-03-13

Peptides

Putative chromatin binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative chromatin binding protein