SMTL ID : 6qta.1

Crystal structure of Rea1-MIDAS/Rsa4-UBL complex from Chaetomium thermophilum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.64, S.66, T.138 Chain B: E.97 6 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:S.64, A:S.66, A:T.138, B:E.97, H2O.1, H2O.2

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: D.106, V.107, L.142, R.146 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.107, A:V.107 Salt bridges: A:R.146 SO4.3: 4 residues within 4Å: Chain A: K.28, N.77, E.81, R.211 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.77, A:E.81 Water bridges: A:R.211, A:R.211 Salt bridges: A:K.28, A:R.211 SO4.4: 1 residues within 4Å: Chain A: R.41 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.41

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: S.137, T.138, V.180, Q.181, D.184 Chain B: N.94, F.96, E.97 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:N.94, B:E.97, A:T.138, A:Q.181, A:Q.181, A:D.184 Water bridges: B:N.94, A:T.138, A:L.179 GOL.6: 3 residues within 4Å: Chain A: T.105, D.106 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.105 GOL.7: 1 residues within 4Å: Chain A: F.25 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.77 GOL.8: 4 residues within 4Å: Chain A: V.109, A.110, D.115, Q.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.130 Water bridges: A:Q.130 GOL.9: 3 residues within 4Å: Chain A: S.120, Q.121, D.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.121, A:D.122 Water bridges: A:D.122 GOL.10: 3 residues within 4Å: Chain A: A.31, Q.34, S.35 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.35 GOL.11: 4 residues within 4Å: Chain A: R.10, P.11, D.106, Q.135 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.135 Water bridges: A:R.10, A:T.132, A:R.134, A:Q.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmed, Y.L. et al., Crystal structures of Rea1-MIDAS bound to its ribosome assembly factor ligands resembling integrin-ligand-type complexes. Nat Commun (2019)

Release Date

2019-08-07

Peptides

Midasin,Midasin: A
Ribosome assembly protein 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Midasin,Midasin

Ribosome assembly protein 4

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