SMTL ID : 6qv7.1

Crystal structure of a CHAD domain from Chlorobium tepidum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-tetramer

Ligands

24 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 2 residues within 4Å: Chain A: R.128, R.132 Ligand excluded by PLIP IPA.2: 3 residues within 4Å: Chain A: R.100, E.103, D.248 Ligand excluded by PLIP IPA.3: 3 residues within 4Å: Chain A: G.140, R.141, E.142 Ligand excluded by PLIP IPA.4: 6 residues within 4Å: Chain A: D.90, D.93, S.94, L.123, D.126, H.130 Ligand excluded by PLIP IPA.5: 5 residues within 4Å: Chain B: T.238, D.241, N.242, T.245, I.297 Ligand excluded by PLIP IPA.6: 5 residues within 4Å: Chain A: S.45, E.46, H.49, R.92 Chain B: R.234 Ligand excluded by PLIP IPA.21: 2 residues within 4Å: Chain B: R.128, R.132 Ligand excluded by PLIP IPA.22: 3 residues within 4Å: Chain B: R.100, E.103, D.248 Ligand excluded by PLIP IPA.23: 3 residues within 4Å: Chain B: G.140, R.141, E.142 Ligand excluded by PLIP IPA.24: 6 residues within 4Å: Chain B: D.90, D.93, S.94, L.123, D.126, H.130 Ligand excluded by PLIP IPA.25: 5 residues within 4Å: Chain A: T.238, D.241, N.242, T.245, I.297 Ligand excluded by PLIP IPA.26: 5 residues within 4Å: Chain A: R.234 Chain B: S.45, E.46, H.49, R.92 Ligand excluded by PLIP IPA.41: 2 residues within 4Å: Chain C: R.128, R.132 Ligand excluded by PLIP IPA.42: 3 residues within 4Å: Chain C: R.100, E.103, D.248 Ligand excluded by PLIP IPA.43: 3 residues within 4Å: Chain C: G.140, R.141, E.142 Ligand excluded by PLIP IPA.44: 6 residues within 4Å: Chain C: D.90, D.93, S.94, L.123, D.126, H.130 Ligand excluded by PLIP IPA.45: 5 residues within 4Å: Chain D: T.238, D.241, N.242, T.245, I.297 Ligand excluded by PLIP IPA.46: 5 residues within 4Å: Chain C: S.45, E.46, H.49, R.92 Chain D: R.234 Ligand excluded by PLIP IPA.61: 2 residues within 4Å: Chain D: R.128, R.132 Ligand excluded by PLIP IPA.62: 3 residues within 4Å: Chain D: R.100, E.103, D.248 Ligand excluded by PLIP IPA.63: 3 residues within 4Å: Chain D: G.140, R.141, E.142 Ligand excluded by PLIP IPA.64: 6 residues within 4Å: Chain D: D.90, D.93, S.94, L.123, D.126, H.130 Ligand excluded by PLIP IPA.65: 5 residues within 4Å: Chain C: T.238, D.241, N.242, T.245, I.297 Ligand excluded by PLIP IPA.66: 5 residues within 4Å: Chain C: R.234 Chain D: S.45, E.46, H.49, R.92 Ligand excluded by PLIP

24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 3 residues within 4Å: Chain A: S.199, D.200, A.201 Ligand excluded by PLIP EDO.8: 2 residues within 4Å: Chain A: L.159, P.160 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain A: R.52, I.55, R.56, R.59, G.85, N.89 Ligands: SO4.19 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: K.211, R.214, Q.240, D.241 Ligands: SO4.15, SO4.17 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain C: M.253, E.254, Q.257, R.287 Ligand excluded by PLIP EDO.12: 8 residues within 4Å: Chain A: N.66, G.67, F.69, D.70, P.71, T.74, T.164, P.166 Ligand excluded by PLIP EDO.27: 3 residues within 4Å: Chain B: S.199, D.200, A.201 Ligand excluded by PLIP EDO.28: 2 residues within 4Å: Chain B: L.159, P.160 Ligand excluded by PLIP EDO.29: 7 residues within 4Å: Chain B: R.52, I.55, R.56, R.59, G.85, N.89 Ligands: SO4.39 Ligand excluded by PLIP EDO.30: 6 residues within 4Å: Chain B: K.211, R.214, Q.240, D.241 Ligands: SO4.35, SO4.37 Ligand excluded by PLIP EDO.31: 4 residues within 4Å: Chain D: M.253, E.254, Q.257, R.287 Ligand excluded by PLIP EDO.32: 8 residues within 4Å: Chain B: N.66, G.67, F.69, D.70, P.71, T.74, T.164, P.166 Ligand excluded by PLIP EDO.47: 3 residues within 4Å: Chain C: S.199, D.200, A.201 Ligand excluded by PLIP EDO.48: 2 residues within 4Å: Chain C: L.159, P.160 Ligand excluded by PLIP EDO.49: 7 residues within 4Å: Chain C: R.52, I.55, R.56, R.59, G.85, N.89 Ligands: SO4.59 Ligand excluded by PLIP EDO.50: 6 residues within 4Å: Chain C: K.211, R.214, Q.240, D.241 Ligands: SO4.55, SO4.57 Ligand excluded by PLIP EDO.51: 4 residues within 4Å: Chain A: M.253, E.254, Q.257, R.287 Ligand excluded by PLIP EDO.52: 8 residues within 4Å: Chain C: N.66, G.67, F.69, D.70, P.71, T.74, T.164, P.166 Ligand excluded by PLIP EDO.67: 3 residues within 4Å: Chain D: S.199, D.200, A.201 Ligand excluded by PLIP EDO.68: 2 residues within 4Å: Chain D: L.159, P.160 Ligand excluded by PLIP EDO.69: 7 residues within 4Å: Chain D: R.52, I.55, R.56, R.59, G.85, N.89 Ligands: SO4.79 Ligand excluded by PLIP EDO.70: 6 residues within 4Å: Chain D: K.211, R.214, Q.240, D.241 Ligands: SO4.75, SO4.77 Ligand excluded by PLIP EDO.71: 4 residues within 4Å: Chain B: M.253, E.254, Q.257, R.287 Ligand excluded by PLIP EDO.72: 8 residues within 4Å: Chain D: N.66, G.67, F.69, D.70, P.71, T.74, T.164, P.166 Ligand excluded by PLIP

32 x SO4: SULFATE ION(Non-functional Binders)

SO4.13: 4 residues within 4Å: Chain A: H.49, R.52, R.56, R.92 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain A: V.53, R.56, R.57, K.211, Y.215 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain A: R.207, K.211, G.244 Ligands: EDO.10 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain A: R.113 Chain B: H.295 Chain C: Y.284 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain A: S.5, R.57, R.214, E.218 Ligands: EDO.10 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain A: R.285 Chain C: L.107, K.286 Chain D: K.289, H.293 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain A: R.56 Ligands: EDO.9 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain A: L.129, R.132, R.136 Ligand excluded by PLIP SO4.33: 4 residues within 4Å: Chain B: H.49, R.52, R.56, R.92 Ligand excluded by PLIP SO4.34: 5 residues within 4Å: Chain B: V.53, R.56, R.57, K.211, Y.215 Ligand excluded by PLIP SO4.35: 4 residues within 4Å: Chain B: R.207, K.211, G.244 Ligands: EDO.30 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain A: H.295 Chain B: R.113 Chain D: Y.284 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain B: S.5, R.57, R.214, E.218 Ligands: EDO.30 Ligand excluded by PLIP SO4.38: 5 residues within 4Å: Chain B: R.285 Chain C: K.289, H.293 Chain D: L.107, K.286 Ligand excluded by PLIP SO4.39: 2 residues within 4Å: Chain B: R.56 Ligands: EDO.29 Ligand excluded by PLIP SO4.40: 3 residues within 4Å: Chain B: L.129, R.132, R.136 Ligand excluded by PLIP SO4.53: 4 residues within 4Å: Chain C: H.49, R.52, R.56, R.92 Ligand excluded by PLIP SO4.54: 5 residues within 4Å: Chain C: V.53, R.56, R.57, K.211, Y.215 Ligand excluded by PLIP SO4.55: 4 residues within 4Å: Chain C: R.207, K.211, G.244 Ligands: EDO.50 Ligand excluded by PLIP SO4.56: 3 residues within 4Å: Chain A: Y.284 Chain C: R.113 Chain D: H.295 Ligand excluded by PLIP SO4.57: 5 residues within 4Å: Chain C: S.5, R.57, R.214, E.218 Ligands: EDO.50 Ligand excluded by PLIP SO4.58: 5 residues within 4Å: Chain A: L.107, K.286 Chain B: K.289, H.293 Chain C: R.285 Ligand excluded by PLIP SO4.59: 2 residues within 4Å: Chain C: R.56 Ligands: EDO.49 Ligand excluded by PLIP SO4.60: 3 residues within 4Å: Chain C: L.129, R.132, R.136 Ligand excluded by PLIP SO4.73: 4 residues within 4Å: Chain D: H.49, R.52, R.56, R.92 Ligand excluded by PLIP SO4.74: 5 residues within 4Å: Chain D: V.53, R.56, R.57, K.211, Y.215 Ligand excluded by PLIP SO4.75: 4 residues within 4Å: Chain D: R.207, K.211, G.244 Ligands: EDO.70 Ligand excluded by PLIP SO4.76: 3 residues within 4Å: Chain B: Y.284 Chain C: H.295 Chain D: R.113 Ligand excluded by PLIP SO4.77: 5 residues within 4Å: Chain D: S.5, R.57, R.214, E.218 Ligands: EDO.70 Ligand excluded by PLIP SO4.78: 5 residues within 4Å: Chain A: K.289, H.293 Chain B: L.107, K.286 Chain D: R.285 Ligand excluded by PLIP SO4.79: 2 residues within 4Å: Chain D: R.56 Ligands: EDO.69 Ligand excluded by PLIP SO4.80: 3 residues within 4Å: Chain D: L.129, R.132, R.136 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorenzo-Orts, L. et al., Molecular characterization of CHAD domains as inorganic polyphosphate-binding modules. Life Sci Alliance (2019)

Release Date

2019-05-29

Peptides

Uncharacterized protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Uncharacterized protein

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