SMTL ID : 6qvv.2 (1 other biounit)

Structure and function of phenuiviridae cap snatching endonucleases

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x MN3: MANGANESE (III) ION(Non-covalent)

MN3.1: 4 residues within 4Å: Chain A: H.79, D.114, E.128, F.129 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.79, A:D.114, A:E.128, A:F.129, H2O.1, H2O.2

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: H.79, F.129, T.130, T.131, K.146 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.130, A:T.131, A:T.131 Water bridges: A:H.79, A:K.146 Salt bridges: A:K.146 SO4.3: 4 residues within 4Å: Chain A: Q.111, S.112, K.149, Y.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.111, A:S.112 Salt bridges: A:K.149 SO4.4: 4 residues within 4Å: Chain A: L.21, R.23, D.140, R.144 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.140, A:D.140 Water bridges: A:R.23, A:R.144 Salt bridges: A:R.23, A:R.144

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: T.62, Q.64, E.67, G.84, H.85, R.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.62, A:R.192, A:R.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, R. et al., Structure and function of the Toscana virus cap-snatching endonuclease. Nucleic Acids Res. (2019)

Release Date

2019-09-25

Peptides

RNA-dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA-dependent RNA polymerase

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