SMTL ID : 6qyb.1

Streptomyces lividans Ccsp mutant - H111A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

homo-tetramer

Ligands

78 x CU1: COPPER (I) ION(Non-covalent)

CU1.1: 11 residues within 4Å: Chain A: C.22, D.45, C.48, C.84, C.101, C.105 Ligands: CU1.2, CU1.3, CU1.7, CU1.8, CU1.19 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.22, A:D.45, A:C.84 CU1.2: 10 residues within 4Å: Chain A: C.18, C.22, C.48, C.84, C.105 Ligands: CU1.1, CU1.3, CU1.7, CU1.16, CU1.17 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.22, A:C.48, A:C.105 CU1.3: 10 residues within 4Å: Chain A: C.18, A.19, C.22, C.48, C.105 Ligands: CU1.1, CU1.2, CU1.7, CU1.16, CU1.17 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.18, A:C.18, A:C.22 CU1.4: 6 residues within 4Å: Chain A: C.25, A.28, H.97, C.98 Ligands: CU1.5, CU1.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.25, A:H.97 CU1.5: 8 residues within 4Å: Chain A: C.25, C.29, H.97, C.98 Ligands: CU1.4, CU1.6, CU1.18, CU1.20 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.25, A:H.97, A:C.98 CU1.6: 10 residues within 4Å: Chain A: C.25, C.29, D.45, H.97, C.98 Ligands: CU1.4, CU1.5, CU1.9, CU1.18, CU1.20 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.25, A:C.25, A:C.29 CU1.7: 9 residues within 4Å: Chain A: C.22, C.101, A.102, C.105 Ligands: CU1.1, CU1.2, CU1.3, CU1.8, CU1.19 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.101, A:C.101, A:C.105 CU1.8: 11 residues within 4Å: Chain A: C.22, C.25, D.45, C.84, C.88, C.101 Ligands: CU1.1, CU1.7, CU1.9, CU1.19, CU1.20 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.45, A:C.88, A:C.101 CU1.9: 9 residues within 4Å: Chain A: C.25, C.41, I.42, D.45, C.88 Ligands: CU1.6, CU1.8, CU1.18, CU1.20 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.41, A:C.41, A:D.45 CU1.10: 11 residues within 4Å: Chain A: C.15, C.18, C.52, C.77, C.81, C.108 Ligands: CU1.13, CU1.14, CU1.15, CU1.16, CU1.17 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.52, A:C.108 CU1.11: 5 residues within 4Å: Chain A: C.11, I.12, C.15 Ligands: CU1.12, CU1.15 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.11, A:C.11, A:C.15 CU1.12: 7 residues within 4Å: Chain A: C.11, C.15, L.74, C.112 Ligands: CU1.11, CU1.13, CU1.15 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.11, A:C.112 CU1.13: 7 residues within 4Å: Chain A: C.108, E.109, C.112 Ligands: CU1.10, CU1.12, CU1.14, CU1.15 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.108, A:C.108, A:C.112 CU1.14: 9 residues within 4Å: Chain A: C.52, C.77, V.80, C.81 Ligands: CU1.10, CU1.13, CU1.15, CU1.16, CU1.17 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.77, A:C.77, A:C.81 CU1.15: 11 residues within 4Å: Chain A: C.15, C.52, T.55, C.77, C.108, C.112 Ligands: CU1.10, CU1.11, CU1.12, CU1.13, CU1.14 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.15, A:C.77 CU1.16: 11 residues within 4Å: Chain A: C.18, C.48, C.52, C.81, C.105, C.108 Ligands: CU1.2, CU1.3, CU1.10, CU1.14, CU1.17 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.18, A:C.81 CU1.17: 8 residues within 4Å: Chain A: C.48, C.52, C.81 Ligands: CU1.2, CU1.3, CU1.10, CU1.14, CU1.16 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.48, A:C.48, A:C.52 CU1.18: 7 residues within 4Å: Chain A: C.29, C.41, C.98 Ligands: CU1.5, CU1.6, CU1.9, CU1.20 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.29, A:C.41, A:C.98 CU1.19: 7 residues within 4Å: Chain A: D.45, C.84, C.88, C.105 Ligands: CU1.1, CU1.7, CU1.8 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.84, A:C.84, A:C.88 CU1.20: 11 residues within 4Å: Chain A: C.25, C.41, D.45, C.88, C.98, C.101 Ligands: CU1.5, CU1.6, CU1.8, CU1.9, CU1.18 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.25, A:C.88, A:C.98 CU1.21: 11 residues within 4Å: Chain B: C.22, D.45, C.48, C.84, C.101, C.105 Ligands: CU1.22, CU1.23, CU1.26, CU1.27, CU1.38 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.22, B:D.45, B:C.84 CU1.22: 10 residues within 4Å: Chain B: C.18, C.22, C.48, C.84, C.105 Ligands: CU1.21, CU1.23, CU1.26, CU1.35, CU1.36 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.22, B:C.48, B:C.105 CU1.23: 10 residues within 4Å: Chain B: C.18, A.19, C.22, C.48, C.105 Ligands: CU1.21, CU1.22, CU1.26, CU1.35, CU1.36 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.18, B:C.18, B:C.22 CU1.24: 10 residues within 4Å: Chain B: C.25, A.26, C.29, D.45, H.97, C.98 Ligands: CU1.25, CU1.28, CU1.37, CU1.39 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.25, B:C.25, B:C.29 CU1.25: 7 residues within 4Å: Chain B: C.25, C.29, H.97, C.98 Ligands: CU1.24, CU1.28, CU1.37 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.25, B:H.97, B:C.98 CU1.26: 9 residues within 4Å: Chain B: C.22, C.101, A.102, C.105 Ligands: CU1.21, CU1.22, CU1.23, CU1.27, CU1.38 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.101, B:C.101, B:C.105 CU1.27: 11 residues within 4Å: Chain B: C.22, C.25, D.45, C.84, C.88, C.101 Ligands: CU1.21, CU1.26, CU1.28, CU1.38, CU1.39 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.45, B:C.88, B:C.101 CU1.28: 11 residues within 4Å: Chain B: C.25, C.41, D.45, C.88, C.98, C.101 Ligands: CU1.24, CU1.25, CU1.27, CU1.37, CU1.39 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.25, B:C.88, B:C.98 CU1.29: 11 residues within 4Å: Chain B: C.15, C.18, C.52, C.77, C.81, C.108 Ligands: CU1.32, CU1.33, CU1.34, CU1.35, CU1.36 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.52, B:C.108 CU1.30: 6 residues within 4Å: Chain B: C.11, I.12, C.15 Ligands: CU1.31, CU1.32, CU1.34 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.11, B:C.11, B:C.15 CU1.31: 7 residues within 4Å: Chain B: C.11, C.15, L.74, C.112 Ligands: CU1.30, CU1.32, CU1.34 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.11, B:C.112 CU1.32: 8 residues within 4Å: Chain B: C.108, E.109, C.112 Ligands: CU1.29, CU1.30, CU1.31, CU1.33, CU1.34 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.108, B:C.108, B:C.112 CU1.33: 8 residues within 4Å: Chain B: C.52, C.77, C.81 Ligands: CU1.29, CU1.32, CU1.34, CU1.35, CU1.36 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.77, B:C.77, B:C.81 CU1.34: 11 residues within 4Å: Chain B: C.15, C.52, T.55, C.77, C.108, C.112 Ligands: CU1.29, CU1.30, CU1.31, CU1.32, CU1.33 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.15, B:C.77 CU1.35: 11 residues within 4Å: Chain B: C.18, C.48, C.52, C.81, C.105, C.108 Ligands: CU1.22, CU1.23, CU1.29, CU1.33, CU1.36 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.18, B:C.81 CU1.36: 8 residues within 4Å: Chain B: C.48, C.52, C.81 Ligands: CU1.22, CU1.23, CU1.29, CU1.33, CU1.35 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.48, B:C.48, B:C.52 CU1.37: 7 residues within 4Å: Chain B: C.29, C.41, C.98 Ligands: CU1.24, CU1.25, CU1.28, CU1.39 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:C.29, B:C.41 CU1.38: 7 residues within 4Å: Chain B: D.45, C.84, C.88, C.105 Ligands: CU1.21, CU1.26, CU1.27 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.84, B:C.84, B:C.88 CU1.39: 9 residues within 4Å: Chain B: C.25, C.41, I.42, D.45, C.88 Ligands: CU1.24, CU1.27, CU1.28, CU1.37 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.41, B:C.41, B:D.45 CU1.40: 11 residues within 4Å: Chain C: C.22, D.45, C.48, C.84, C.101, C.105 Ligands: CU1.41, CU1.42, CU1.46, CU1.47, CU1.58 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.22, C:D.45, C:C.84 CU1.41: 10 residues within 4Å: Chain C: C.18, C.22, C.48, C.84, C.105 Ligands: CU1.40, CU1.42, CU1.46, CU1.55, CU1.56 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.22, C:C.48, C:C.105 CU1.42: 10 residues within 4Å: Chain C: C.18, A.19, C.22, C.48, C.105 Ligands: CU1.40, CU1.41, CU1.46, CU1.55, CU1.56 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.18, C:C.18, C:C.22 CU1.43: 6 residues within 4Å: Chain C: C.25, A.28, H.97, C.98 Ligands: CU1.44, CU1.45 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.25, C:H.97 CU1.44: 8 residues within 4Å: Chain C: C.25, C.29, H.97, C.98 Ligands: CU1.43, CU1.45, CU1.57, CU1.59 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.25, C:H.97, C:C.98 CU1.45: 10 residues within 4Å: Chain C: C.25, C.29, D.45, H.97, C.98 Ligands: CU1.43, CU1.44, CU1.48, CU1.57, CU1.59 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.25, C:C.25, C:C.29 CU1.46: 9 residues within 4Å: Chain C: C.22, C.101, A.102, C.105 Ligands: CU1.40, CU1.41, CU1.42, CU1.47, CU1.58 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.101, C:C.101, C:C.105 CU1.47: 11 residues within 4Å: Chain C: C.22, C.25, D.45, C.84, C.88, C.101 Ligands: CU1.40, CU1.46, CU1.48, CU1.58, CU1.59 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.45, C:C.88, C:C.101 CU1.48: 9 residues within 4Å: Chain C: C.25, C.41, I.42, D.45, C.88 Ligands: CU1.45, CU1.47, CU1.57, CU1.59 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.41, C:C.41, C:D.45 CU1.49: 11 residues within 4Å: Chain C: C.15, C.18, C.52, C.77, C.81, C.108 Ligands: CU1.52, CU1.53, CU1.54, CU1.55, CU1.56 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.52, C:C.108 CU1.50: 5 residues within 4Å: Chain C: C.11, I.12, C.15 Ligands: CU1.51, CU1.54 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.11, C:C.11, C:C.15 CU1.51: 7 residues within 4Å: Chain C: C.11, C.15, L.74, C.112 Ligands: CU1.50, CU1.52, CU1.54 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.11, C:C.112 CU1.52: 7 residues within 4Å: Chain C: C.108, E.109, C.112 Ligands: CU1.49, CU1.51, CU1.53, CU1.54 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.108, C:C.108, C:C.112 CU1.53: 9 residues within 4Å: Chain C: C.52, C.77, V.80, C.81 Ligands: CU1.49, CU1.52, CU1.54, CU1.55, CU1.56 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.77, C:C.77, C:C.81 CU1.54: 11 residues within 4Å: Chain C: C.15, C.52, T.55, C.77, C.108, C.112 Ligands: CU1.49, CU1.50, CU1.51, CU1.52, CU1.53 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.15, C:C.77 CU1.55: 11 residues within 4Å: Chain C: C.18, C.48, C.52, C.81, C.105, C.108 Ligands: CU1.41, CU1.42, CU1.49, CU1.53, CU1.56 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.18, C:C.81 CU1.56: 8 residues within 4Å: Chain C: C.48, C.52, C.81 Ligands: CU1.41, CU1.42, CU1.49, CU1.53, CU1.55 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.48, C:C.48, C:C.52 CU1.57: 7 residues within 4Å: Chain C: C.29, C.41, C.98 Ligands: CU1.44, CU1.45, CU1.48, CU1.59 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.29, C:C.41, C:C.98 CU1.58: 7 residues within 4Å: Chain C: D.45, C.84, C.88, C.105 Ligands: CU1.40, CU1.46, CU1.47 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.84, C:C.84, C:C.88 CU1.59: 11 residues within 4Å: Chain C: C.25, C.41, D.45, C.88, C.98, C.101 Ligands: CU1.44, CU1.45, CU1.47, CU1.48, CU1.57 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.25, C:C.88, C:C.98 CU1.60: 11 residues within 4Å: Chain D: C.22, D.45, C.48, C.84, C.101, C.105 Ligands: CU1.61, CU1.62, CU1.65, CU1.66, CU1.77 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.22, D:D.45, D:C.84 CU1.61: 10 residues within 4Å: Chain D: C.18, C.22, C.48, C.84, C.105 Ligands: CU1.60, CU1.62, CU1.65, CU1.74, CU1.75 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.22, D:C.48, D:C.105 CU1.62: 10 residues within 4Å: Chain D: C.18, A.19, C.22, C.48, C.105 Ligands: CU1.60, CU1.61, CU1.65, CU1.74, CU1.75 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.18, D:C.18, D:C.22 CU1.63: 10 residues within 4Å: Chain D: C.25, A.26, C.29, D.45, H.97, C.98 Ligands: CU1.64, CU1.67, CU1.76, CU1.78 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.25, D:C.25, D:C.29 CU1.64: 7 residues within 4Å: Chain D: C.25, C.29, H.97, C.98 Ligands: CU1.63, CU1.67, CU1.76 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.25, D:H.97, D:C.98 CU1.65: 9 residues within 4Å: Chain D: C.22, C.101, A.102, C.105 Ligands: CU1.60, CU1.61, CU1.62, CU1.66, CU1.77 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.101, D:C.101, D:C.105 CU1.66: 11 residues within 4Å: Chain D: C.22, C.25, D.45, C.84, C.88, C.101 Ligands: CU1.60, CU1.65, CU1.67, CU1.77, CU1.78 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.45, D:C.88, D:C.101 CU1.67: 11 residues within 4Å: Chain D: C.25, C.41, D.45, C.88, C.98, C.101 Ligands: CU1.63, CU1.64, CU1.66, CU1.76, CU1.78 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.25, D:C.88, D:C.98 CU1.68: 11 residues within 4Å: Chain D: C.15, C.18, C.52, C.77, C.81, C.108 Ligands: CU1.71, CU1.72, CU1.73, CU1.74, CU1.75 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.52, D:C.108 CU1.69: 6 residues within 4Å: Chain D: C.11, I.12, C.15 Ligands: CU1.70, CU1.71, CU1.73 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.11, D:C.11, D:C.15 CU1.70: 7 residues within 4Å: Chain D: C.11, C.15, L.74, C.112 Ligands: CU1.69, CU1.71, CU1.73 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.11, D:C.112 CU1.71: 8 residues within 4Å: Chain D: C.108, E.109, C.112 Ligands: CU1.68, CU1.69, CU1.70, CU1.72, CU1.73 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.108, D:C.108, D:C.112 CU1.72: 8 residues within 4Å: Chain D: C.52, C.77, C.81 Ligands: CU1.68, CU1.71, CU1.73, CU1.74, CU1.75 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.77, D:C.77, D:C.81 CU1.73: 11 residues within 4Å: Chain D: C.15, C.52, T.55, C.77, C.108, C.112 Ligands: CU1.68, CU1.69, CU1.70, CU1.71, CU1.72 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.15, D:C.77 CU1.74: 11 residues within 4Å: Chain D: C.18, C.48, C.52, C.81, C.105, C.108 Ligands: CU1.61, CU1.62, CU1.68, CU1.72, CU1.75 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.18, D:C.81 CU1.75: 8 residues within 4Å: Chain D: C.48, C.52, C.81 Ligands: CU1.61, CU1.62, CU1.68, CU1.72, CU1.74 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.48, D:C.48, D:C.52 CU1.76: 7 residues within 4Å: Chain D: C.29, C.41, C.98 Ligands: CU1.63, CU1.64, CU1.67, CU1.78 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.29, D:C.41 CU1.77: 7 residues within 4Å: Chain D: D.45, C.84, C.88, C.105 Ligands: CU1.60, CU1.65, CU1.66 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.84, D:C.84, D:C.88 CU1.78: 9 residues within 4Å: Chain D: C.25, C.41, I.42, D.45, C.88 Ligands: CU1.63, CU1.66, CU1.67, CU1.76 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.41, D:C.41, D:D.45

Links

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Citation

Straw, M.L. et al., A Histidine Residue and a Tetranuclear Cuprous-thiolate Cluster Dominate the Copper Loading Landscape of a Copper Storage Protein from Streptomyces lividans. Chemistry (2019)

Release Date

2019-07-10

Peptides

cytosolic copper storage protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

cytosolic copper storage protein