- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SSA: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 8 residues within 4Å:- Chain A: M.195, Q.257
- Chain B: M.178, Q.257, S.258, A.259, D.282
- Ligands: EDO.9
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.258, A:Q.198, A:Q.257, A:Q.257
- Water bridges: B:Q.198, B:Q.198, A:A.259
EDO.3: 5 residues within 4Å:- Chain A: F.239, Y.240, E.252, F.254
- Chain B: T.167
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:T.167, A:E.252
EDO.4: 6 residues within 4Å:- Chain A: P.105, K.213, F.214, I.327, G.328, F.329
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.213, A:K.213, A:F.329
EDO.5: 5 residues within 4Å:- Chain A: I.4, R.38, D.94, M.97, T.98
No protein-ligand interaction detected (PLIP)EDO.9: 8 residues within 4Å:- Chain A: M.178, Q.257, S.258, A.259, D.282
- Chain B: M.195, Q.257
- Ligands: EDO.2
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:Q.198, B:Q.257, B:Q.257, A:S.258
- Water bridges: B:A.259, A:Q.198, A:Q.198
EDO.10: 5 residues within 4Å:- Chain A: T.167
- Chain B: F.239, Y.240, E.252, F.254
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.167, A:T.167, B:E.252
EDO.11: 6 residues within 4Å:- Chain B: P.105, K.213, F.214, I.327, G.328, F.329
3 PLIP interactions:3 interactions with chain B- Water bridges: B:K.213, B:K.213, B:F.329
EDO.12: 5 residues within 4Å:- Chain B: I.4, R.38, D.94, M.97, T.98
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.98
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.6: 7 residues within 4Å:- Chain A: Q.210, D.217, L.218, P.230, T.231, R.262
- Ligands: SSA.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.210, A:D.217
- Water bridges: A:D.217, A:S.330
PEG.13: 7 residues within 4Å:- Chain B: Q.210, D.217, L.218, P.230, T.231, R.262
- Ligands: SSA.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.210, B:D.217
- Water bridges: B:S.330
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.7: 3 residues within 4Å:- Chain A: E.349, S.352
- Ligands: SSA.1
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.349, H2O.2, H2O.6, H2O.13
MG.14: 3 residues within 4Å:- Chain B: E.349, S.352
- Ligands: SSA.8
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.349, H2O.17, H2O.20, H2O.28
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cain, R. et al., Structure-Guided Enhancement of Selectivity of Chemical Probe Inhibitors Targeting Bacterial Seryl-tRNA Synthetase. J.Med.Chem. (2019)
- Release Date
- 2020-01-22
- Peptides
- Serine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.03 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SSA: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cain, R. et al., Structure-Guided Enhancement of Selectivity of Chemical Probe Inhibitors Targeting Bacterial Seryl-tRNA Synthetase. J.Med.Chem. (2019)
- Release Date
- 2020-01-22
- Peptides
- Serine--tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A