SMTL ID : 6r43.1

Structure of P110 from Mycoplasma Genitalium complexed with 6'-SL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-SIA.1: 9 residues within 4Å: Chain A: A.159, P.175, S.176, P.177, N.178, A.179, S.434, F.435, S.436 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.159, A:N.178, A:N.178, A:N.178, A:A.179, A:S.434, A:S.434, A:S.436, A:Y.447 Hydrophobic interactions: A:F.435

1 x K: POTASSIUM ION(Non-covalent)

K.2: 5 residues within 4Å: Chain A: T.809, R.812, D.814, G.817, K.818 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.809, A:D.814, A:D.814, A:G.817, H2O.2

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: P.24, I.25, T.26, D.27, S.28, K.29 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.27, A:S.28, A:K.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aparicio, D. et al., Mycoplasma genitalium adhesin P110 binds sialic-acid human receptors. Nat Commun (2018)

Release Date

2019-04-10

Peptides

Mgp-operon protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mgp-operon protein 3

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