SMTL ID : 6r5w.1

Crystal structure of the receptor binding protein (gp15) of Listeria phage PSA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 4 residues within 4Å: Chain A: K.98, G.99, T.100, D.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.98 Water bridges: A:D.156 1PE.8: 3 residues within 4Å: Chain B: T.9, V.10, E.13 No protein-ligand interaction detected (PLIP)

9 x CD: CADMIUM ION(Non-covalent)

CD.2: 3 residues within 4Å: Chain A: Q.136 Chain B: Q.136 Chain C: Q.136 No protein-ligand interaction detected (PLIP) CD.3: 6 residues within 4Å: Chain A: H.14, H.21 Chain B: H.14, H.21 Chain C: H.14, H.21 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B Metal complexes: A:H.14, A:H.21, C:H.14, C:H.21, B:H.14, B:H.21 CD.4: 3 residues within 4Å: Chain A: R.87, D.117 Chain C: R.80 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.117, H2O.5, H2O.6, H2O.6, H2O.18 CD.5: 3 residues within 4Å: Chain A: T.23, D.26 Chain C: K.27 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.26, A:D.26, H2O.6, H2O.18, H2O.18 CD.6: 5 residues within 4Å: Chain A: N.86, R.87, E.170 Chain C: S.59, V.60 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.170, A:E.170, H2O.18 CD.9: 3 residues within 4Å: Chain A: R.80 Chain B: R.87, D.117 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.117, B:D.117, H2O.7, H2O.12 CD.11: 3 residues within 4Å: Chain B: R.80 Chain C: R.87, D.117 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:D.117, H2O.12, H2O.18, H2O.18, H2O.19 CD.12: 3 residues within 4Å: Chain B: K.27 Chain C: T.23, D.26 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.26, C:D.26, H2O.9, H2O.11, H2O.15 CD.13: 1 residues within 4Å: Chain C: E.55 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.1, H2O.6, H2O.15, H2O.16, H2O.17

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 2 residues within 4Å: Chain B: G.99, T.100 No protein-ligand interaction detected (PLIP) ACT.10: 2 residues within 4Å: Chain C: F.88, F.113 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunne, M. et al., Reprogramming Bacteriophage Host Range through Structure-Guided Design of Chimeric Receptor Binding Proteins. Cell Rep (2019)

Release Date

2019-10-30

Peptides

Gp15 protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Gp15 protein