SMTL ID : 6ray.1

D. melanogaster CMG-DNA, State 2A

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)(Non-covalent)

ATP.1: 11 residues within 4Å: Chain A: S.301, I.302, G.304, S.343, A.345, K.346, S.347, Q.348 Chain E: R.510, V.609, R.610 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain E Hydrogen bonds: A:G.304, A:G.304, A:A.345, A:A.345, A:K.346, A:S.347, A:Q.348 Salt bridges: A:K.346, A:K.346, E:R.510, E:R.510, E:R.610 ATP.2: 17 residues within 4Å: Chain B: I.472, E.474, P.514, G.515, T.516, S.517, K.518, S.519, Q.520, M.521, E.577, A.618 Chain C: H.459, E.463, R.514, A.603, R.604 16 PLIP interactions: 11 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:E.474, B:S.517, B:K.518, B:S.519, B:S.519, B:S.519, B:Q.520, B:Q.520, B:E.577, B:A.618, C:E.463, C:R.604 Salt bridges: B:K.518, C:H.459, C:R.514, C:R.604 ATP.4: 16 residues within 4Å: Chain B: F.502, H.590, R.645, P.733, R.734 Chain D: I.350, Y.351, G.352, P.390, S.391, A.393, K.394, S.395, Q.396, I.540, K.543 14 PLIP interactions: 3 interactions with chain B, 11 interactions with chain D Salt bridges: B:H.590, B:R.645, B:R.734, D:K.394, D:K.394 Hydrogen bonds: D:Y.351, D:S.391, D:A.393, D:K.394, D:K.394, D:S.395, D:S.395, D:Q.396, D:K.543 ATP.6: 15 residues within 4Å: Chain D: E.470, Q.471, V.610, E.614 Chain K: I.470, H.473, P.510, G.511, T.512, A.513, K.514, S.515, F.517, E.573, L.660 9 PLIP interactions: 7 interactions with chain K, 2 interactions with chain D Hydrogen bonds: K:G.511, K:K.514, K:S.515, K:S.515, K:E.573, D:R.379, D:Q.471 Salt bridges: K:K.514, K:K.514

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)(Non-covalent)

ADP.3: 15 residues within 4Å: Chain A: E.422, R.610, E.613 Chain C: E.343, I.344, Y.345, H.347, P.383, G.384, V.385, A.386, K.387, S.388, L.533, I.537 9 PLIP interactions: 2 interactions with chain A, 7 interactions with chain C Salt bridges: A:R.610, A:R.610, C:K.387 Hydrogen bonds: C:Y.345, C:Y.345, C:A.386, C:K.387, C:S.388, C:S.388 ADP.5: 10 residues within 4Å: Chain E: P.380, G.381, A.383, K.384, S.385, Q.386, N.486, H.532, I.533, V.536 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:G.381, E:A.383, E:S.385, E:S.385, E:S.385, E:Q.386, E:N.486, E:N.486, E:H.532 Salt bridges: E:K.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eickhoff, P. et al., Molecular Basis for ATP-Hydrolysis-Driven DNA Translocation by the CMG Helicase of the Eukaryotic Replisome. Cell Rep (2019)

Release Date

2019-09-11

Peptides

DNA replication licensing factor Mcm3: A
DNA replication licensing factor MCM4: B
DNA replication licensing factor Mcm7: C
DNA replication licensing factor Mcm6: D
DNA replication licensing factor Mcm5: E
CDC45L: F
IP07275p: G
Probable DNA replication complex GINS protein PSF2: H
AT18545p: I
DNA replication complex GINS protein SLD5: J
DNA replication licensing factor Mcm2: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
3

B
4

C
7

D
6

E
5

F
A

G
H

H
L

I
M

J
N

K
2

DNA replication licensing factor Mcm3

DNA replication licensing factor MCM4

DNA replication licensing factor Mcm7

DNA replication licensing factor Mcm6

DNA replication licensing factor Mcm5

CDC45L

IP07275p

Probable DNA replication complex GINS protein PSF2

AT18545p

DNA replication complex GINS protein SLD5

DNA replication licensing factor Mcm2

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