SMTL ID : 6rfl.1

Structure of the complete Vaccinia DNA-dependent RNA polymerase complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-2-1-1-1-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1087, C.1090, C.1103, C.1106 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1087, A:C.1090, A:C.1103, A:C.1106 ZN.2: 4 residues within 4Å: Chain E: C.326, H.328, C.363, C.366 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.326, E:H.328, E:C.363, E:C.366 ZN.4: 4 residues within 4Å: Chain L: C.49, C.52, C.59, H.62 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.49, L:C.52, L:C.59, L:H.62 ZN.5: 4 residues within 4Å: Chain L: C.90, C.93, C.130, C.135 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.90, L:C.93, L:C.130, L:C.135

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain L: D.415, D.417, D.419 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:D.415, L:D.417, L:D.417, L:D.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grimm, C. et al., Structural Basis of Poxvirus Transcription: Vaccinia RNA Polymerase Complexes. Cell (2019)

Release Date

2019-12-11

Peptides

DNA-dependent RNA polymerase subunit rpo132: A
DNA-directed RNA polymerase subunit: B
DNA-directed RNA polymerase 19 kDa subunit: C
DNA-dependent RNA polymerase subunit rpo18: D
Putative H4L RNA polymerase-associated transcription factor RAP94: E
DNA-dependent RNA polymerase subunit rpo7: F
Small subunit of mRNA capping enzyme: G
Large subunit of mRNA capping enzyme: H
Virion core protein: IM
Transcription factor VETF 82kDa large subunit: J
DNA-dependent RNA polymerase subunit rpo147: L
Nucleoside triphosphate phosphohydrolase-I: N
DNA-directed RNA polymerase 35 kDa subunit: O
DNA-directed RNA polymerase 30 kDa polypeptide: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
F

D
G

E
I

F
J

G
L

H
O

I
R

M
Q

J
K

L
A

N
Y

O
C

P
S

DNA-dependent RNA polymerase subunit rpo132

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase 19 kDa subunit

DNA-dependent RNA polymerase subunit rpo18

Putative H4L RNA polymerase-associated transcription factor RAP94

DNA-dependent RNA polymerase subunit rpo7

Small subunit of mRNA capping enzyme

Large subunit of mRNA capping enzyme

Virion core protein

Transcription factor VETF 82kDa large subunit

DNA-dependent RNA polymerase subunit rpo147

Nucleoside triphosphate phosphohydrolase-I

DNA-directed RNA polymerase 35 kDa subunit

DNA-directed RNA polymerase 30 kDa polypeptide

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