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SMTL ID : 6rhk.1

The crystal structure of human carbonic anhydrase II in complex with 4-(3-benzylimidazolidine-1-carbonyl)benzenesulfonamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: K4B.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x K4B: 4-[3-(phenylmethyl)imidazolidin-1-yl]carbonylbenzenesulfonamide(Non-covalent)

K4B.2:

14 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, V.142, L.197, T.198, T.199, P.201, W.208
Ligands: ZN.1, GOL.4

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:V.121, A:L.197, A:L.197, A:P.201
Hydrogen bonds: A:T.198, A:T.198

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:	4 residues within 4Å: Chain A: Y.7, D.242, W.244, P.246 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.7, A:W.244
GOL.4:	8 residues within 4Å: Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199 Ligands: K4B.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92 Water bridges: A:H.64, A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chiaramonte, N. et al., Sulfonamides incorporating piperazine bioisosteres as potent human carbonic anhydrase I, II, IV and IX inhibitors. Bioorg.Chem. (2019)

Release Date

2020-05-13

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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Background

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