SMTL ID : 6ric.1

Structure of the core Vaccinia Virus DNA-dependent RNA polymerase complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.415, D.417, D.419 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.417, A:D.419

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.49, C.52, C.59, H.62 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.49, A:C.52, A:C.59, A:H.62 ZN.3: 5 residues within 4Å: Chain A: C.90, C.93, C.130, N.132, C.135 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.90, A:C.93, A:C.130, A:C.135 ZN.4: 5 residues within 4Å: Chain B: C.1087, C.1090, C.1103, C.1106, P.1113 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1087, B:C.1090, B:C.1103, B:C.1106 ZN.5: 4 residues within 4Å: Chain H: C.7, C.10, C.39, C.40 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.7, H:C.10, H:C.39, H:C.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hillen, H.S. et al., Structural Basis of Poxvirus Transcription: Transcribing and Capping Vaccinia Complexes. Cell (2019)

Release Date

2019-12-18

Peptides

DNA-dependent RNA polymerase subunit rpo147: A
DNA-dependent RNA polymerase subunit rpo132: B
DNA-directed RNA polymerase 35 kDa subunit: C
DNA-directed RNA polymerase subunit: D
DNA-directed RNA polymerase 19 kDa subunit: E
DNA-dependent RNA polymerase subunit rpo18: F
RAP94 transcription factor: G
DNA-dependent RNA polymerase subunit rpo7: H
DNA-directed RNA polymerase 30 kDa polypeptide: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
G

G
I

H
J

I
S

DNA-dependent RNA polymerase subunit rpo147

DNA-dependent RNA polymerase subunit rpo132

DNA-directed RNA polymerase 35 kDa subunit

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase 19 kDa subunit

DNA-dependent RNA polymerase subunit rpo18

RAP94 transcription factor

DNA-dependent RNA polymerase subunit rpo7

DNA-directed RNA polymerase 30 kDa polypeptide

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