SMTL ID : 6riq.1

MinCD filament from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-11-11-mer

Ligands

11 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain C: T.17, D.119 Ligands: ATP.2 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.17 MG.3: 3 residues within 4Å: Chain D: T.17, D.119 Ligands: ATP.4 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.17 MG.5: 3 residues within 4Å: Chain G: T.17, D.119 Ligands: ATP.6 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:T.17 MG.7: 3 residues within 4Å: Chain J: T.17, D.119 Ligands: ATP.8 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:T.17 MG.9: 3 residues within 4Å: Chain K: T.17, D.119 Ligands: ATP.10 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:T.17 MG.11: 3 residues within 4Å: Chain M: T.17, D.119 Ligands: ATP.12 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:T.17 MG.13: 3 residues within 4Å: Chain N: T.17, D.119 Ligands: ATP.14 1 PLIP interactions: 1 interactions with chain N Metal complexes: N:T.17 MG.15: 3 residues within 4Å: Chain Q: T.17, D.119 Ligands: ATP.16 1 PLIP interactions: 1 interactions with chain Q Metal complexes: Q:T.17 MG.17: 3 residues within 4Å: Chain R: T.17, D.119 Ligands: ATP.18 1 PLIP interactions: 1 interactions with chain R Metal complexes: R:T.17 MG.19: 3 residues within 4Å: Chain U: T.17, D.119 Ligands: ATP.20 1 PLIP interactions: 1 interactions with chain U Metal complexes: U:T.17 MG.21: 3 residues within 4Å: Chain V: T.17, D.119 Ligands: ATP.22 1 PLIP interactions: 1 interactions with chain V Metal complexes: V:T.17

11 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)

ATP.2: 19 residues within 4Å: Chain C: G.12, G.13, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Chain D: K.11, G.12, E.145 Ligands: MG.1 16 PLIP interactions: 13 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:G.13, C:V.14, C:G.15, C:G.15, C:T.17, C:T.18, C:T.18, C:N.45, C:R.181, C:P.211, C:S.213, D:G.12, D:E.145 Salt bridges: C:K.16, C:K.16, D:K.11 ATP.4: 20 residues within 4Å: Chain C: K.11, G.12, E.145 Chain D: G.12, G.13, V.14, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Ligands: MG.3 15 PLIP interactions: 12 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:G.13, D:V.14, D:G.15, D:G.15, D:T.17, D:T.18, D:N.45, D:R.181, D:P.211, D:S.213, C:G.12, C:E.145 Salt bridges: D:K.16, D:K.16, C:K.11 ATP.6: 16 residues within 4Å: Chain G: G.12, G.13, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Ligands: MG.5 13 PLIP interactions: 13 interactions with chain G Hydrogen bonds: G:G.13, G:V.14, G:G.15, G:G.15, G:T.17, G:T.18, G:T.18, G:N.45, G:R.181, G:P.211, G:S.213 Salt bridges: G:K.16, G:K.16 ATP.8: 19 residues within 4Å: Chain J: G.12, G.13, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Chain K: K.11, G.12, E.145 Ligands: MG.7 16 PLIP interactions: 13 interactions with chain J, 3 interactions with chain K Hydrogen bonds: J:G.13, J:V.14, J:G.15, J:G.15, J:T.17, J:T.18, J:T.18, J:N.45, J:R.181, J:P.211, J:S.213, K:G.12, K:E.145 Salt bridges: J:K.16, J:K.16, K:K.11 ATP.10: 20 residues within 4Å: Chain J: K.11, G.12, E.145 Chain K: G.12, G.13, V.14, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Ligands: MG.9 15 PLIP interactions: 3 interactions with chain J, 12 interactions with chain K Hydrogen bonds: J:G.12, J:E.145, K:G.13, K:V.14, K:G.15, K:G.15, K:T.17, K:T.18, K:N.45, K:R.181, K:P.211, K:S.213 Salt bridges: J:K.11, K:K.16, K:K.16 ATP.12: 19 residues within 4Å: Chain M: G.12, G.13, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Chain N: K.11, G.12, E.145 Ligands: MG.11 16 PLIP interactions: 13 interactions with chain M, 3 interactions with chain N Hydrogen bonds: M:G.13, M:V.14, M:G.15, M:G.15, M:T.17, M:T.18, M:T.18, M:N.45, M:R.181, M:P.211, M:S.213, N:G.12, N:E.145 Salt bridges: M:K.16, M:K.16, N:K.11 ATP.14: 20 residues within 4Å: Chain M: K.11, G.12, E.145 Chain N: G.12, G.13, V.14, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Ligands: MG.13 15 PLIP interactions: 12 interactions with chain N, 3 interactions with chain M Hydrogen bonds: N:G.13, N:V.14, N:G.15, N:G.15, N:T.17, N:T.18, N:N.45, N:R.181, N:P.211, N:S.213, M:G.12, M:E.145 Salt bridges: N:K.16, N:K.16, M:K.11 ATP.16: 19 residues within 4Å: Chain Q: G.12, G.13, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Chain R: K.11, G.12, E.145 Ligands: MG.15 16 PLIP interactions: 13 interactions with chain Q, 3 interactions with chain R Hydrogen bonds: Q:G.13, Q:V.14, Q:G.15, Q:G.15, Q:T.17, Q:T.18, Q:T.18, Q:N.45, Q:R.181, Q:P.211, Q:S.213, R:G.12, R:E.145 Salt bridges: Q:K.16, Q:K.16, R:K.11 ATP.18: 20 residues within 4Å: Chain Q: K.11, G.12, E.145 Chain R: G.12, G.13, V.14, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Ligands: MG.17 15 PLIP interactions: 12 interactions with chain R, 3 interactions with chain Q Hydrogen bonds: R:G.13, R:V.14, R:G.15, R:G.15, R:T.17, R:T.18, R:N.45, R:R.181, R:P.211, R:S.213, Q:G.12, Q:E.145 Salt bridges: R:K.16, R:K.16, Q:K.11 ATP.20: 19 residues within 4Å: Chain U: G.12, G.13, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Chain V: K.11, G.12, E.145 Ligands: MG.19 16 PLIP interactions: 3 interactions with chain V, 13 interactions with chain U Hydrogen bonds: V:G.12, V:E.145, U:G.13, U:V.14, U:G.15, U:G.15, U:T.17, U:T.18, U:T.18, U:N.45, U:R.181, U:P.211, U:S.213 Salt bridges: V:K.11, U:K.16, U:K.16 ATP.22: 20 residues within 4Å: Chain U: K.11, G.12, E.145 Chain V: G.12, G.13, V.14, G.15, K.16, T.17, T.18, N.45, A.122, T.180, R.181, I.210, P.211, E.212, S.213, V.216 Ligands: MG.21 15 PLIP interactions: 3 interactions with chain U, 12 interactions with chain V Hydrogen bonds: U:G.12, U:E.145, V:G.13, V:V.14, V:G.15, V:G.15, V:T.17, V:T.18, V:N.45, V:R.181, V:P.211, V:S.213 Salt bridges: U:K.11, V:K.16, V:K.16

Links

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Citation

Szewczak-Harris, A. et al., Cryo-EM structure of the MinCD copolymeric filament from Pseudomonas aeruginosa at 3.1 angstrom resolution. Febs Lett. (2019)

Release Date

2019-06-19

Peptides

MinC: ABEFHILOPST
Site-determining protein: CDGJKMNQRUV

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
E

F
F

H
H

I
I

L
L

O
O

P
P

S
S

T
T

C
C

D
D

G
G

J
J

K
K

M
M

N
N

Q
Q

R
R

U
U

V
V

MinC

Site-determining protein