- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 7 residues within 4Å:- Chain A: H.16, D.18, D.231, T.232, K.238
- Ligands: K.1, PPK.5
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.18
MG.3: 3 residues within 4Å:- Chain A: G.253, D.264
- Ligands: PPK.9
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.264, H2O.1
MG.7: 5 residues within 4Å:- Chain A: E.10, K.160
- Chain B: D.113, D.264
- Ligands: PPK.5
No protein-ligand interaction detected (PLIP)MG.10: 5 residues within 4Å:- Chain B: D.18, R.237, K.238
- Ligands: K.8, PPK.9
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.18
MG.14: 5 residues within 4Å:- Chain C: D.18, T.232, R.237
- Ligands: K.13, PPK.16
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:D.18, C:D.18
MG.18: 5 residues within 4Å:- Chain C: D.113, Q.114, D.264
- Chain D: K.160
- Ligands: PPK.21
No protein-ligand interaction detected (PLIP)MG.19: 6 residues within 4Å:- Chain C: E.10, K.160
- Chain D: D.113, Q.114, D.264
- Ligands: PPK.16
No protein-ligand interaction detected (PLIP)MG.22: 7 residues within 4Å:- Chain D: H.16, D.18, D.231, T.232, K.238
- Ligands: K.20, PPK.21
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:D.18, D:D.18
- 8 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)(Covalent)
SAM.4: 19 residues within 4Å:- Chain A: H.16, P.17, D.158, K.160, S.180, S.220, R.222, F.223, D.231
- Chain B: A.42, E.57, Q.93, D.96, I.97, G.112, D.113, K.262, I.295
- Ligands: PPK.5
14 PLIP interactions:7 interactions with chain B, 7 interactions with chain A- Hydrophobic interactions: B:I.97
- Hydrogen bonds: B:E.57, B:E.57, B:E.57, A:D.158, A:S.220, A:S.220, A:D.231
- Water bridges: B:I.97
- Salt bridges: B:D.113, B:K.262, A:D.231
- pi-Stacking: A:F.223, A:F.223
SAM.6: 12 residues within 4Å:- Chain A: I.58, T.59, T.60, H.61, A.62, Y.63, V.64, V.66, V.90, K.92
- Chain D: W.71, E.81
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:I.58, A:T.60, A:H.61, A:V.64, A:V.64
- Salt bridges: D:E.81
- pi-Stacking: D:W.71
SAM.11: 21 residues within 4Å:- Chain A: A.42, E.57, Q.93, D.96, I.97, G.112, D.113, K.262, I.295
- Chain B: H.16, P.17, D.158, K.160, S.180, S.220, R.222, F.223, I.225, G.230, D.231
- Ligands: PPK.9
16 PLIP interactions:9 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:E.57, A:E.57, A:E.57, A:Q.93, B:D.158, B:S.220, B:R.222, B:D.231
- Water bridges: A:D.96, A:K.262, A:K.262
- Salt bridges: A:D.113, A:K.262, B:D.231
- pi-Stacking: B:F.223, B:F.223
SAM.12: 13 residues within 4Å:- Chain B: I.58, T.59, T.60, H.61, A.62, Y.63, V.64, V.66, V.90, K.92
- Chain C: W.71, E.81, N.82
9 PLIP interactions:3 interactions with chain C, 6 interactions with chain B- Hydrogen bonds: C:N.82, B:I.58, B:T.60, B:T.60, B:V.64, B:V.64
- Salt bridges: C:E.81, B:H.61
- pi-Stacking: C:W.71
SAM.15: 19 residues within 4Å:- Chain C: H.16, P.17, D.158, K.160, S.220, R.222, F.223, I.225, D.231
- Chain D: A.42, E.57, Q.93, D.96, I.97, G.112, D.113, K.262, I.295
- Ligands: PPK.16
13 PLIP interactions:6 interactions with chain D, 7 interactions with chain C- Hydrogen bonds: D:E.57, D:Q.93, C:D.158, C:S.220, C:R.222, C:D.231
- Water bridges: D:K.262, D:K.262
- Salt bridges: D:D.113, D:K.262, C:D.231
- pi-Stacking: C:F.223, C:F.223
SAM.17: 14 residues within 4Å:- Chain B: W.71, E.81, N.82
- Chain C: I.58, T.59, T.60, H.61, A.62, Y.63, V.64, V.66, V.90, N.91, K.92
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:I.58, C:T.60, C:T.60, C:H.61, C:V.64, C:V.64, B:N.82
- pi-Stacking: B:W.71
SAM.23: 19 residues within 4Å:- Chain C: A.42, E.57, Q.93, D.96, I.97, G.112, D.113, K.262, I.295
- Chain D: H.16, P.17, D.158, K.160, S.220, R.222, F.223, I.225, D.231
- Ligands: PPK.21
12 PLIP interactions:7 interactions with chain D, 5 interactions with chain C- Hydrogen bonds: D:D.158, D:S.220, D:R.222, D:D.231, C:E.57, C:Q.93
- Salt bridges: D:D.231, C:D.113, C:K.262
- pi-Stacking: D:F.223, D:F.223
- Water bridges: C:I.97
SAM.24: 13 residues within 4Å:- Chain A: W.71, E.81, N.82
- Chain D: I.58, T.59, T.60, H.61, A.62, Y.63, V.64, V.66, V.90, K.92
8 PLIP interactions:5 interactions with chain D, 3 interactions with chain A- Hydrogen bonds: D:I.58, D:T.60, D:T.60, D:V.64, D:V.64, A:N.82
- Salt bridges: A:E.81
- pi-Stacking: A:W.71
- 4 x PPK: (DIPHOSPHONO)AMINOPHOSPHONIC ACID(Non-covalent)
PPK.5: 16 residues within 4Å:- Chain A: H.16, D.18, K.160, D.231, R.237, K.238
- Chain B: D.113, G.252, G.253, A.254, K.258, D.264
- Ligands: K.1, MG.2, SAM.4, MG.7
13 PLIP interactions:7 interactions with chain A, 6 interactions with chain B- Hydrogen bonds: A:R.237, A:R.237, A:R.237, A:K.238, B:D.113, B:A.254, B:K.258, B:K.258, B:K.258
- Salt bridges: A:H.16, A:K.160, A:K.238
- Water bridges: B:E.44
PPK.9: 16 residues within 4Å:- Chain A: D.113, G.252, G.253, A.254, K.258, D.264
- Chain B: H.16, D.18, K.160, D.231, R.237, K.238
- Ligands: MG.3, K.8, MG.10, SAM.11
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.237, B:R.237, A:A.254, A:K.258, A:K.258
- Water bridges: B:K.160, B:K.160
- Salt bridges: B:H.16, B:K.160, B:K.238
PPK.16: 16 residues within 4Å:- Chain C: H.16, D.18, K.160, D.231, R.237, K.238
- Chain D: D.113, G.252, G.253, A.254, K.258, D.264
- Ligands: K.13, MG.14, SAM.15, MG.19
13 PLIP interactions:9 interactions with chain C, 4 interactions with chain D- Hydrogen bonds: C:D.231, C:D.231, C:R.237, C:R.237, C:R.237, C:K.238, D:A.254, D:K.258, D:K.258, D:K.258
- Salt bridges: C:H.16, C:K.160, C:K.238
PPK.21: 15 residues within 4Å:- Chain C: D.113, G.253, A.254, K.258, D.264
- Chain D: H.16, D.18, K.160, D.231, R.237, K.238
- Ligands: MG.18, K.20, MG.22, SAM.23
13 PLIP interactions:5 interactions with chain C, 8 interactions with chain D- Hydrogen bonds: C:D.113, C:A.254, C:K.258, C:K.258, C:K.258, D:D.231, D:R.237, D:R.237, D:R.237, D:K.238
- Salt bridges: D:H.16, D:K.160, D:K.238
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kleiner, D. et al., The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase. J.Mol.Biol. (2019)
- Release Date
- 2019-09-25
- Peptides
- Methionine adenosyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)(Covalent)
- 4 x PPK: (DIPHOSPHONO)AMINOPHOSPHONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kleiner, D. et al., The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase. J.Mol.Biol. (2019)
- Release Date
- 2019-09-25
- Peptides
- Methionine adenosyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H