SMTL ID : 6rkf.3 (5 other biounits)

Structure of human DASPO

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.22 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: V.18, G.19, A.20, G.21, V.22, V.23, G.24, S.44, D.45, K.46, T.51, T.52, S.53, A.56, A.57, G.58, M.59, R.174, I.175, C.191, S.192, G.193, G.195, L.199, G.285, L.286, R.287, H.315, G.316, S.317, G.318, G.319, I.320, S.321 Ligands: GOL.3 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:R.287 Hydrogen bonds: A:A.20, A:V.22, A:V.23, A:G.24, A:D.45, A:K.46, A:K.46, A:T.52, A:A.57, A:G.58, A:M.59, A:M.59, A:R.174, A:I.175, A:I.175, A:G.316, A:G.319, A:I.320, A:S.321 pi-Cation interactions: A:R.287

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 5 residues within 4Å: Chain A: P.218, V.220, E.221, G.236, T.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.220, A:E.221, A:E.221

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: R.225, G.229, Y.234, R.246, R.287, S.317 Ligands: FAD.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.225, A:R.246, A:R.287, A:R.287, A:S.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Molla, G. et al., Structure and kinetic properties of human d-aspartate oxidase, the enzyme-controlling d-aspartate levels in brain. Faseb J. (2020)

Release Date

2020-03-11

Peptides

D-aspartate oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

D-aspartate oxidase

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