SMTL ID : 6rlw.1 (4 other biounits)

Structure of the human 8-oxoguanine DNA Glycosylase hOGG1 in complex with inhibitor TH5487

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x K8Q: 4-(4-bromanyl-2-oxidanylidene-3~{H}-benzimidazol-1-yl)-~{N}-(4-iodophenyl)piperidine-1-carboxamide(Non-covalent)

K8Q.1: 19 residues within 4Å: Chain A: S.51, G.52, F.55, F.154, N.161, I.162, I.165, K.259, C.263, L.266, M.267, H.280, G.322, Q.325, A.326, F.329, D.332, L.333, S.336 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.280, A:F.329, A:F.329, A:D.332 Hydrogen bonds: A:G.52, A:I.162, A:K.259 pi-Stacking: A:H.280, A:H.280, A:F.329 Halogen bonds: A:G.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Visnes, T. et al., Targeting OGG1 arrests cancer cell proliferation by inducing replication stress. Nucleic Acids Res. (2020)

Release Date

2020-07-22

Peptides

N-glycosylase/DNA lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

N-glycosylase/DNA lyase

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