SMTL ID : 6rnr.1

The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x KBN: 2-(trifluoromethyl)-9~{H}-purine-6-thiol(Non-covalent)

KBN.1: 9 residues within 4Å: Chain A: K.57, P.159, L.162, E.163, A.259, R.261 Chain B: T.8, T.9, T.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.261

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: Y.58, H.72, R.74, T.113, E.115, Y.125, K.129 Chain B: T.9, T.10 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.58, A:Y.58, A:R.74, A:Y.125, A:K.129, A:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rieux, C. et al., Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights. Int J Mol Sci (2020)

Release Date

2020-04-15

Peptides

Formamidopyrimidine-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Formamidopyrimidine-DNA glycosylase