- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x 6PC: PYRIDINE-2-CARBOXYLIC ACID(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: D.412, L.413, R.441
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:L.413
- Water bridges: A:D.412, A:D.412, A:E.438, A:R.441, A:R.441, A:R.441, A:R.441, A:R.441
- Salt bridges: A:R.441
SO4.5: 3 residues within 4Å:- Chain A: T.393, A.394, R.397
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.394
- Salt bridges: A:R.397
SO4.6: 2 residues within 4Å:- Chain A: Q.371, R.383
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.371
- Salt bridges: A:R.383
SO4.7: 2 residues within 4Å:- Chain A: T.503, L.504
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.504
- Water bridges: A:G.507
SO4.11: 3 residues within 4Å:- Chain B: D.412, L.413, R.441
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:L.413
- Water bridges: B:E.438, B:R.441, B:R.441, B:R.441, B:R.441, B:R.441
- Salt bridges: B:R.441
SO4.12: 3 residues within 4Å:- Chain B: T.393, A.394, R.397
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.394
- Salt bridges: B:R.397
SO4.13: 2 residues within 4Å:- Chain B: Q.371, R.383
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.371
- Water bridges: B:G.367, B:R.383, B:R.383
- Salt bridges: B:R.383
SO4.18: 3 residues within 4Å:- Chain C: D.412, L.413, R.441
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:D.412, C:L.413
- Water bridges: C:D.412, C:D.412, C:E.438, C:R.441, C:R.441, C:R.441, C:R.441, C:R.441
- Salt bridges: C:R.441
SO4.19: 3 residues within 4Å:- Chain C: T.393, A.394, R.397
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:A.394
- Salt bridges: C:R.397
SO4.20: 2 residues within 4Å:- Chain C: Q.371, R.383
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.371
- Salt bridges: C:R.383
SO4.21: 2 residues within 4Å:- Chain C: T.503, L.504
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:L.504
- Water bridges: C:G.507
SO4.25: 3 residues within 4Å:- Chain D: D.412, L.413, R.441
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:D.412, D:L.413
- Water bridges: D:R.441, D:R.441, D:R.441, D:R.441, D:R.441, D:R.441
- Salt bridges: D:R.441
SO4.26: 3 residues within 4Å:- Chain D: T.393, A.394, R.397
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:A.394
- Salt bridges: D:R.397
SO4.27: 2 residues within 4Å:- Chain D: Q.371, R.383
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:Q.371
- Water bridges: D:G.367, D:R.383, D:R.383
- Salt bridges: D:R.383
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 5 residues within 4Å:- Chain A: E.471, K.472
- Chain B: L.154, R.490
- Ligands: 6PC.3
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:L.154, A:E.471, A:E.471, A:K.472
- Water bridges: B:F.259, A:K.472
GOL.14: 5 residues within 4Å:- Chain A: L.154, R.490
- Chain B: E.471, K.472
- Ligands: 6PC.10
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:E.471, B:E.471, B:K.472, A:L.154
- Water bridges: B:K.472, A:F.259
GOL.22: 5 residues within 4Å:- Chain C: E.471, K.472
- Chain D: L.154, R.490
- Ligands: 6PC.17
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:E.471, C:K.472, D:L.154
- Water bridges: C:K.472, D:F.259
GOL.28: 5 residues within 4Å:- Chain C: L.154, R.490
- Chain D: E.471, K.472
- Ligands: 6PC.24
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:L.154, D:E.471, D:K.472
- Water bridges: C:F.259, D:K.472
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hasse, D. et al., Structure and mechanism of piperideine-6-carboxylate dehydrogenase from Streptomyces clavuligerus. Acta Crystallogr D Struct Biol (2019)
- Release Date
- 2019-12-18
- Peptides
- Semialdehyde dehydrogenase Pcd: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x 6PC: PYRIDINE-2-CARBOXYLIC ACID(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hasse, D. et al., Structure and mechanism of piperideine-6-carboxylate dehydrogenase from Streptomyces clavuligerus. Acta Crystallogr D Struct Biol (2019)
- Release Date
- 2019-12-18
- Peptides
- Semialdehyde dehydrogenase Pcd: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B