SMTL ID : 6rwt.1

Crystal structure of the Cbp3 homolog from Brucella abortus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.82, S.86 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain A: E.74 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.74, H2O.1, H2O.2, H2O.3, H2O.4, H2O.8

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: F.55, H.59, Y.109 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.109 ACT.4: 5 residues within 4Å: Chain A: R.29, K.31, Y.34, D.41, R.46 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.34 Hydrogen bonds: A:R.29

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: K.9, I.16, A.67, A.168 No protein-ligand interaction detected (PLIP) GOL.6: 3 residues within 4Å: Chain A: P.40, T.42, L.44 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.42 Water bridges: A:I.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ndi, M. et al., Structural basis for the interaction of the chaperone Cbp3 with newly synthesized cytochromebduring mitochondrial respiratory chain assembly. J.Biol.Chem. (2019)

Release Date

2019-09-18

Peptides

Ubiquinol-cytochrome C chaperone: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquinol-cytochrome C chaperone