- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x KMK: methyl 1-[4-[[2,4-bis(azanyl)pteridin-6-yl]methyl-(3-oxidanylpropyl)amino]phenyl]carbonylpiperidine-4-carboxylate(Non-covalent)
KMK.2: 9 residues within 4Å:- Chain A: S.114, F.116, D.184, L.191, Y.194, Y.197, L.229, L.232
- Ligands: NDP.1
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:L.191, A:L.229
- Hydrogen bonds: A:R.20, A:S.114, A:D.184, A:Y.194, A:Y.197
- pi-Stacking: A:F.116, A:F.116
- Water bridges: D:R.290
KMK.4: 13 residues within 4Å:- Chain B: R.20, S.114, F.116, D.184, L.191, Y.194, Y.197, L.229, L.232, M.236, V.240
- Chain C: R.290
- Ligands: NDP.3
16 PLIP interactions:14 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:F.116, B:L.191
- Hydrogen bonds: B:R.20, B:S.114, B:S.114, B:D.184, B:Y.197, B:Y.197, C:R.290, C:R.290
- Water bridges: B:D.184, B:D.184, B:D.184, B:D.184
- pi-Stacking: B:F.116, B:F.116
KMK.6: 13 residues within 4Å:- Chain C: R.20, S.114, F.116, D.184, L.191, Y.194, Y.197, G.228, L.229, L.232, V.233, V.240
- Ligands: NDP.5
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:L.229, C:V.240
- Hydrogen bonds: C:R.20, C:S.114, C:S.114, C:Y.197
- Water bridges: C:D.184, C:D.184
- pi-Stacking: C:F.116, C:F.116, C:F.116
KMK.8: 12 residues within 4Å:- Chain D: R.20, S.114, F.116, D.184, L.191, Y.194, Y.197, G.228, L.229, L.232, V.240
- Ligands: NDP.7
12 PLIP interactions:12 interactions with chain D- Hydrophobic interactions: D:L.191, D:L.229
- Hydrogen bonds: D:R.20, D:S.114, D:S.114, D:Y.194, D:Y.197, D:Y.197
- Water bridges: D:D.184, D:D.184
- pi-Stacking: D:F.116, D:F.116
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pohner, I. et al., Multitarget, Selective Compound Design Yields Potent Inhibitors of a Kinetoplastid Pteridine Reductase 1. J.Med.Chem. (2022)
- Release Date
- 2020-07-15
- Peptides
- Pteridine reductase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x KMK: methyl 1-[4-[[2,4-bis(azanyl)pteridin-6-yl]methyl-(3-oxidanylpropyl)amino]phenyl]carbonylpiperidine-4-carboxylate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pohner, I. et al., Multitarget, Selective Compound Design Yields Potent Inhibitors of a Kinetoplastid Pteridine Reductase 1. J.Med.Chem. (2022)
- Release Date
- 2020-07-15
- Peptides
- Pteridine reductase 1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D