SMTL ID : 6ry0.1

Crystal structure of Dfg5 from Chaetomium thermophilum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 7 residues within 4Å: Chain A: E.238, T.239, W.240, N.289, T.292, G.293, R.296 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.296

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.73, H.385, T.386 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.73, A:H.385, H2O.5, H2O.8, H2O.14

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 7 residues within 4Å: Chain A: L.156, Q.160, T.213, N.413, G.420, D.421, P.422 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.160 Water bridges: A:T.213, A:G.420

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vogt, M.S. et al., Structural base for the transfer of GPI-anchored glycoproteins into fungal cell walls. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-08-12

Peptides

Mannan endo-1,6-alpha-mannosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mannan endo-1,6-alpha-mannosidase

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