- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- monomer
- Ligands
- 1 x MLE- IIL- SER- ALO- 5BV: Globomycin(Non-covalent)
- 6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.2: 12 residues within 4Å:- Chain A: I.37, V.41, V.118, L.122, I.158, S.161, S.162, I.165
- Ligands: OLC.3, OLC.5, OLC.6, OLC.22
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.41, A:L.122, A:I.158, A:I.158
OLC.3: 5 residues within 4Å:- Chain A: L.114, F.115, V.118
- Ligands: OLC.2, 7PE.16
No protein-ligand interaction detected (PLIP)OLC.4: 8 residues within 4Å:- Chain A: A.38, V.39, V.42, I.43, F.106, S.121, F.124
- Ligands: 7PE.15
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.39, A:V.42, A:V.42, A:F.124
- Hydrogen bonds: A:S.121
OLC.5: 7 residues within 4Å:- Chain A: T.33, L.36, I.37, F.40, F.44, I.158
- Ligands: OLC.2
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.36, A:I.37, A:F.40, A:F.40, A:F.44, A:I.158
OLC.6: 7 residues within 4Å:- Chain A: T.48, I.51, I.52, F.62, L.69
- Ligands: OLC.2, OLC.22
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:T.48, A:L.69
OLC.22: 16 residues within 4Å:- Chain A: L.69, N.76, D.142, T.146, F.153, P.154, I.155, F.156, D.160, S.161, T.164
- Ligands: MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1, OLC.2, OLC.6
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:L.69, A:T.146, A:F.156, A:F.156, A:F.156, A:F.156, A:F.156
- Hydrogen bonds: A:N.76, A:I.155
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 3 residues within 4Å:- Chain A: I.107, K.108, Q.111
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.108, A:K.108, A:Q.111
GOL.8: 3 residues within 4Å:- Chain A: F.153, P.154
- Ligands: 7PE.23
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.152
GOL.9: 4 residues within 4Å:- Chain A: A.173, K.176
- Ligands: 7PE.11, 7PE.17
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.177
GOL.20: 6 residues within 4Å:- Chain A: S.85, G.86, K.87, M.88, T.89
- Ligands: GOL.21
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.87, A:M.88, A:T.89
GOL.21: 3 residues within 4Å:- Chain A: T.89
- Ligands: 7PE.19, GOL.20
No protein-ligand interaction detected (PLIP)- 10 x 7PE: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL(Non-functional Binders)
7PE.10: 3 residues within 4Å:- Chain A: I.98, L.102, F.105
No protein-ligand interaction detected (PLIP)7PE.11: 3 residues within 4Å:- Chain A: N.113, A.173
- Ligands: GOL.9
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.113
7PE.12: 3 residues within 4Å:- Chain A: T.164
- Ligands: MLE-IIL-SER-ALO-5BV.1, MLE-IIL-SER-ALO-5BV.1
No protein-ligand interaction detected (PLIP)7PE.13: 1 residues within 4Å:- Chain A: D.109
No protein-ligand interaction detected (PLIP)7PE.14: 10 residues within 4Å:- Chain A: Q.46, K.49, Y.50, A.53, R.75, D.133, T.137, E.139, V.140, V.141
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.46, A:T.137
7PE.15: 5 residues within 4Å:- Chain A: I.43, Q.46, V.47, Y.50
- Ligands: OLC.4
No protein-ligand interaction detected (PLIP)7PE.16: 5 residues within 4Å:- Chain A: H.26, Y.112, L.114, F.115
- Ligands: OLC.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.114, A:F.115
7PE.17: 5 residues within 4Å:- Chain A: L.174, L.175, K.176, T.178
- Ligands: GOL.9
No protein-ligand interaction detected (PLIP)7PE.19: 4 residues within 4Å:- Chain A: M.88, T.89, F.92
- Ligands: GOL.21
No protein-ligand interaction detected (PLIP)7PE.23: 3 residues within 4Å:- Chain A: W.81
- Ligands: MLE-IIL-SER-ALO-5BV.1, GOL.8
No protein-ligand interaction detected (PLIP)- 1 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olatunji, S. et al., Structures of lipoprotein signal peptidase II from Staphylococcus aureus complexed with antibiotics globomycin and myxovirescin. Nat Commun (2020)
- Release Date
- 2020-01-15
- Peptides
- Lipoprotein signal peptidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- monomer
- Ligands
- 1 x MLE- IIL- SER- ALO- 5BV: Globomycin(Non-covalent)
- 6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 10 x 7PE: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Olatunji, S. et al., Structures of lipoprotein signal peptidase II from Staphylococcus aureus complexed with antibiotics globomycin and myxovirescin. Nat Commun (2020)
- Release Date
- 2020-01-15
- Peptides
- Lipoprotein signal peptidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.