SMTL ID : 6rz0.1

Crystal structure of Escherichia coli Glyoxalase II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: K.191, L.195, I.201, T.202, L.203, P.204, V.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.201, A:P.204

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.56 Ligands: CL.6 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.56, H2O.13 ZN.3: 6 residues within 4Å: Chain A: H.53, H.55, H.58, H.110, D.127 Ligands: ZN.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.53, A:H.55, A:H.110, A:D.127, H2O.2 ZN.4: 7 residues within 4Å: Chain A: N.12, H.53, D.57, H.58, D.127, H.165 Ligands: ZN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.57, A:H.58, A:D.127, A:H.165, H2O.2 ZN.8: 1 residues within 4Å: Chain A: H.100 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.100

1 x CXS: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID(Non-covalent)

CXS.5: 4 residues within 4Å: Chain A: R.136, L.137, F.138, D.249 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.138, A:F.138 Water bridges: A:D.249

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: H.56 Ligands: ZN.2 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain A: H.110, D.127, F.130, G.135, R.136, F.138, Y.167 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skorupskaite, A. et al., Crystal structure of Escherichia coli Glyoxalase II. To Be Published

Release Date

2020-07-15

Peptides

Hydroxyacylglutathione hydrolase GloB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hydroxyacylglutathione hydrolase GloB

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