SMTL ID : 6rz7.1

Crystal structure of the human cysteinyl leukotriene receptor 2 in complex with ONO-2570366 (F222 space group)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

monomer

Ligands

1 x KNW: (2~{S})-8-[[4-[4-(2-chloranyl-5-fluoranyl-phenyl)butoxy]phenyl]carbonylamino]-4-(4-oxidanyl-4-oxidanylidene-butyl)-2,3- dihydro-1,4-benzoxazine-2-carboxylic acid(Non-covalent)

KNW.1: 24 residues within 4Å: Chain A: K.21, S.99, Y.103, Y.107, Y.111, S.153, S.154, L.157, L.172, E.173, L.174, K.178, L.182, M.185, N.186, I.188, A.189, G.193, R.350, H.353, L.354, H.367, L.370 Ligands: OLC.3 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:Y.103, A:Y.107, A:L.174, A:L.182, A:M.185, A:N.186, A:A.189, A:R.350, A:L.354, A:L.370 Hydrogen bonds: A:Y.82, A:S.99, A:Y.103, A:Y.103, A:Y.103 Water bridges: A:Y.82, A:L.172, A:K.178 Salt bridges: A:K.21, A:K.178, A:H.367

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 4 residues within 4Å: Chain A: S.202, Y.205, I.209, R.210 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.205, A:I.209

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 5 residues within 4Å: Chain A: Y.111, L.149, I.150, S.153 Ligands: KNW.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.111, A:Y.111, A:Y.111, A:L.149, A:I.150 OLC.4: 9 residues within 4Å: Chain A: L.48, L.62, I.66, L.69, L.70, S.73, W.140 Ligands: OLA.10, OLA.15 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.48, A:L.62, A:L.69, A:W.140

21 x OLA: OLEIC ACID(Non-covalent)

OLA.5: 7 residues within 4Å: Chain A: Q.183, Y.187, L.190, V.191, L.195, F.199 Ligands: OLA.6 Ligand excluded by PLIP OLA.6: 4 residues within 4Å: Chain A: L.195, F.198, F.199 Ligands: OLA.5 Ligand excluded by PLIP OLA.7: 12 residues within 4Å: Chain A: N.63, S.67, L.70, F.71, Y.100, S.101, N.105, W.140, W.147, M.151 Ligands: OLA.10, OLA.14 Ligand excluded by PLIP OLA.8: 8 residues within 4Å: Chain A: F.20, V.28, I.31, K.368, I.372, L.376, F.383 Ligands: OLA.13 Ligand excluded by PLIP OLA.9: 8 residues within 4Å: Chain A: V.37, G.41, L.42, Y.45, A.402, L.403, K.405 Ligands: OLA.22 Ligand excluded by PLIP OLA.10: 5 residues within 4Å: Chain A: L.70, W.140 Ligands: OLC.4, OLA.7, OLA.14 Ligand excluded by PLIP OLA.11: 6 residues within 4Å: Chain A: L.30, F.33, F.34, D.80, L.83 Ligands: OLA.21 Ligand excluded by PLIP OLA.12: 6 residues within 4Å: Chain A: G.91, D.92, L.93, A.94 Ligands: OLA.16, OLA.20 Ligand excluded by PLIP OLA.13: 5 residues within 4Å: Chain A: F.20, E.23, F.24, V.28 Ligands: OLA.8 Ligand excluded by PLIP OLA.14: 5 residues within 4Å: Chain A: W.140, G.144, W.147 Ligands: OLA.7, OLA.10 Ligand excluded by PLIP OLA.15: 3 residues within 4Å: Chain A: L.48 Ligands: OLC.4, OLA.22 Ligand excluded by PLIP OLA.16: 6 residues within 4Å: Chain A: F.77, I.89, F.90, G.91 Ligands: OLA.12, OLA.17 Ligand excluded by PLIP OLA.17: 3 residues within 4Å: Chain A: I.89, F.90 Ligands: OLA.16 Ligand excluded by PLIP OLA.18: 1 residues within 4Å: Chain A: Y.205 Ligand excluded by PLIP OLA.19: 3 residues within 4Å: Chain A: T.330, I.333, F.390 Ligand excluded by PLIP OLA.20: 2 residues within 4Å: Chain A: L.93 Ligands: OLA.12 Ligand excluded by PLIP OLA.21: 4 residues within 4Å: Chain A: F.77, D.80, R.84 Ligands: OLA.11 Ligand excluded by PLIP OLA.22: 5 residues within 4Å: Chain A: I.44, L.48, Q.49 Ligands: OLA.9, OLA.15 Ligand excluded by PLIP OLA.23: 5 residues within 4Å: Chain A: F.340, P.345, L.366, A.369, T.373 Ligand excluded by PLIP OLA.24: 2 residues within 4Å: Chain A: F.199, L.207 Ligand excluded by PLIP OLA.25: 2 residues within 4Å: Chain A: L.341, F.383 Ligand excluded by PLIP

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.26: 2 residues within 4Å: Chain A: W.223, N.315 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gusach, A. et al., Structural basis of ligand selectivity and disease mutations in cysteinyl leukotriene receptors. Nat Commun (2019)

Release Date

2019-12-11

Peptides

Cysteinyl leukotriene receptor 2,Soluble cytochrome b562,Cysteinyl leukotriene receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Cysteinyl leukotriene receptor 2,Soluble cytochrome b562,Cysteinyl leukotriene receptor 2

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