- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 5 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 3 residues within 4Å:- Chain A: R.266, E.296
- Chain B: E.296
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.266
ACT.5: 3 residues within 4Å:- Chain A: D.37, A.40, R.120
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.40
- Salt bridges: A:R.120
ACT.13: 2 residues within 4Å:- Chain B: H.242, D.271
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:D.271
- Salt bridges: B:H.242
ACT.15: 2 residues within 4Å:- Chain B: R.112, R.115
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.112
ACT.16: 10 residues within 4Å:- Chain A: I.290, Q.293
- Chain B: P.251, A.254, L.255, M.259, D.260, A.261, V.262, W.291
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.255, A:I.290
- Hydrogen bonds: B:D.260, B:A.261, B:V.262, A:Q.293
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)
DAN.9: 16 residues within 4Å:- Chain A: D.14, N.15, S.16, Y.20, C.53, W.95, R.129, H.134, R.202, W.279, F.345, N.346, Q.351, T.352
- Ligands: GOL.1, PG4.6
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:Y.20
- Hydrogen bonds: A:D.14, A:N.15, A:R.129, A:N.346, A:T.352
- Water bridges: A:D.14, A:S.16, A:R.129, A:R.129, A:H.134
- Salt bridges: A:R.129, A:H.134, A:R.202
DAN.17: 15 residues within 4Å:- Chain B: D.14, N.15, S.16, Y.20, C.53, W.95, R.129, H.134, R.202, W.279, F.345, N.346, Q.351, T.352
- Ligands: GOL.14
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:Y.20
- Hydrogen bonds: B:D.14, B:N.15, B:S.16, B:S.16, B:R.129, B:R.129, B:N.346, B:N.346
- Water bridges: B:D.14, B:D.132, B:Y.135, B:Y.135, B:T.352
- Salt bridges: B:R.129, B:H.134, B:R.202
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.10: 8 residues within 4Å:- Chain A: R.411, Y.480, N.481, L.482
- Chain B: E.212, G.256, A.389, P.390
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:G.256, A:R.411, A:N.481
- Water bridges: B:E.212, A:Y.480, A:L.482
TRS.11: 6 residues within 4Å:- Chain A: P.393
- Chain B: R.250, D.285, P.287, W.388, A.395
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.285, B:A.385, B:A.395
- Water bridges: B:D.285, B:R.411, B:R.411, B:R.411, B:R.411
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bule, P. et al., Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action. Nat Commun (2019)
- Release Date
- 2019-11-06
- Peptides
- exosialidase from uncultured bacterium pG7: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 5 x ACT: ACETATE ION(Non-functional Binders)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 2 x DAN: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID(Non-covalent)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bule, P. et al., Inverting family GH156 sialidases define an unusual catalytic motif for glycosidase action. Nat Commun (2019)
- Release Date
- 2019-11-06
- Peptides
- exosialidase from uncultured bacterium pG7: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B