SMTL ID : 6s9v.1 (1 other biounit)

Crystal structure of sucrose 6F-phosphate phosphorylase from Thermoanaerobacter thermosaccharolyticum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.1: 17 residues within 4Å: Chain A: D.63, F.66, M.98, H.101, F.171, Q.179, D.211, A.212, E.252, H.254, H.309, D.310, Q.359, R.413, R.417 Ligands: SO4.2, SO4.7 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:F.66, A:H.101, A:Q.179, A:E.252, A:D.310 Water bridges: A:D.63, A:D.63, A:R.209, A:A.212, A:D.310 Salt bridges: A:D.63, A:D.211, A:D.310

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: F.146, R.148, F.171, Y.215, H.254, H.358, Q.359 Ligands: BTB.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.215, A:Q.359 Salt bridges: A:R.148, A:H.358 SO4.3: 8 residues within 4Å: Chain A: I.24, H.53, L.55, R.209, Y.271, C.308, H.309, Q.390 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.271, A:Y.271, A:H.309 Water bridges: A:R.209, A:R.209 Salt bridges: A:H.53, A:R.209, A:H.309 SO4.4: 2 residues within 4Å: Chain A: K.325, K.328 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.325 SO4.5: 3 residues within 4Å: Chain A: R.460, D.462, K.482 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.460, A:K.482, A:K.482 Salt bridges: A:R.460, A:K.482 SO4.6: 4 residues within 4Å: Chain A: D.402, A.405, H.418, N.419 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.402, A:N.419 Water bridges: A:E.404, A:E.404, A:N.419, A:N.419 Salt bridges: A:H.418 SO4.7: 5 residues within 4Å: Chain A: D.63, K.173, R.413, R.417 Ligands: BTB.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.63 Water bridges: A:R.413, A:R.417 Salt bridges: A:K.173, A:R.413, A:R.417

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.8: 8 residues within 4Å: Chain A: P.59, S.60, S.61, I.69, E.75, K.77, R.105, E.178 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.60, A:S.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franceus, J. et al., Structural Comparison of a Promiscuous and a Highly Specific Sucrose 6 F -Phosphate Phosphorylase. Int J Mol Sci (2019)

Release Date

2019-08-28

Peptides

Sucrose 6(F)-phosphate phosphorylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sucrose 6(F)-phosphate phosphorylase

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