SMTL ID : 6sd8.1

Bd2924 apo-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 31 residues within 4Å: Chain A: M.134, Q.171, W.172, M.173, T.174, G.178, G.179, S.180, F.210, T.211, S.212, K.260, T.263, T.268, V.424, W.428, T.431, N.433, V.434, L.437 Chain B: R.324, A.326, F.327, L.331, H.334, H.337, E.402, M.403, G.405, G.406, Y.409 35 PLIP interactions: 22 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:F.210, A:K.260, A:T.268, A:V.424, A:W.428, B:Y.409, B:Y.409 Hydrogen bonds: A:Q.171, A:M.173, A:T.174, A:T.174, A:T.174, A:G.179, A:S.180, A:S.180, A:E.429, A:T.431, A:V.434, B:M.403, B:G.406 Water bridges: A:F.210, A:S.212, A:S.212, A:T.432, A:N.433, A:N.433, B:Y.320, B:R.324, B:R.324, B:H.337, B:A.407, B:A.407 Salt bridges: B:R.324, B:R.324 pi-Stacking: B:H.334 FAD.2: 33 residues within 4Å: Chain A: R.324, A.326, F.327, L.331, H.334, H.337, E.402, M.403, G.405, G.406, Y.409 Chain B: M.134, Q.171, W.172, M.173, T.174, G.178, G.179, S.180, F.210, T.211, S.212, K.260, T.263, T.268, V.424, I.427, W.428, E.429, T.431, N.433, V.434, L.437 33 PLIP interactions: 22 interactions with chain B, 11 interactions with chain A Hydrophobic interactions: B:F.210, B:K.260, B:T.268, B:V.424, B:W.428, A:Y.409 Hydrogen bonds: B:Q.171, B:M.173, B:T.174, B:T.174, B:T.174, B:T.174, B:G.179, B:S.180, B:S.180, B:E.429, B:T.431, B:V.434, A:E.402, A:G.406 Water bridges: B:F.210, B:S.212, B:S.212, B:T.432, B:N.433, A:R.324, A:R.324, A:R.324, A:R.324, A:A.407 Salt bridges: A:R.324, A:R.324 pi-Stacking: A:H.334 FAD.3: 31 residues within 4Å: Chain C: M.134, Q.171, W.172, M.173, T.174, G.178, G.179, S.180, F.210, T.211, S.212, K.260, T.263, T.268, V.424, W.428, T.431, N.433, V.434, L.437 Chain D: R.324, A.326, F.327, L.331, H.334, H.337, E.402, M.403, G.405, G.406, Y.409 34 PLIP interactions: 22 interactions with chain C, 12 interactions with chain D Hydrophobic interactions: C:F.210, C:K.260, C:T.268, C:V.424, C:W.428, D:Y.409, D:Y.409 Hydrogen bonds: C:Q.171, C:M.173, C:T.174, C:T.174, C:T.174, C:G.179, C:S.180, C:S.180, C:E.429, C:T.431, C:T.431, C:V.434, D:M.403, D:G.406 Water bridges: C:F.210, C:S.212, C:S.212, C:N.433, C:N.433, D:R.324, D:R.324, D:E.402, D:A.407, D:A.407 Salt bridges: D:R.324, D:R.324 pi-Stacking: D:H.334 FAD.4: 33 residues within 4Å: Chain C: R.324, A.326, F.327, L.331, H.334, H.337, E.402, M.403, G.405, G.406, Y.409 Chain D: M.134, Q.171, W.172, M.173, T.174, G.178, G.179, S.180, F.210, T.211, S.212, K.260, T.263, T.268, V.424, I.427, W.428, E.429, T.431, N.433, V.434, L.437 36 PLIP interactions: 22 interactions with chain D, 14 interactions with chain C Hydrophobic interactions: D:F.210, D:K.260, D:T.268, D:V.424, D:W.428, C:Y.409 Hydrogen bonds: D:Q.171, D:M.173, D:T.174, D:T.174, D:T.174, D:T.174, D:G.179, D:S.180, D:S.180, D:E.429, D:T.431, D:T.431, D:V.434, C:E.402, C:G.406 Water bridges: D:F.210, D:S.212, D:S.212, D:N.433, C:R.324, C:R.324, C:R.324, C:R.324, C:H.337, C:H.337, C:E.402, C:A.407 Salt bridges: C:R.324, C:R.324 pi-Stacking: C:H.334

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lepore, R. et al., Target highlights in CASP13: Experimental target structures through the eyes of their authors. Proteins (2019)

Release Date

2019-09-11

Peptides

Probable acyl-CoA dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
A

C
X

D
A

Probable acyl-CoA dehydrogenase

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