SMTL ID : 6sel.1

Multicrystal structure of Thermolysin at room temperature using a multilayer monochromator.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.142, H.146, Y.157, E.166 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.142, A:H.146, A:E.166, A:E.166, H2O.4

1 x ILE: ISOLEUCINE(Non-covalent)

ILE.2: 11 residues within 4Å: Chain A: N.112, A.113, L.133, V.139, H.142, E.143, I.188, L.202, R.203, H.231 Ligands: LYS.3 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:L.133, A:H.142, K.3 Hydrogen bonds: A:N.112, A:R.203, A:R.203

1 x LYS: LYSINE(Non-covalent)

LYS.3: 7 residues within 4Å: Chain A: N.111, N.112, F.130, L.202, R.203, H.231 Ligands: ILE.2 10 PLIP interactions: 5 interactions with chain A, 5 Ligand-Ligand interactions Hydrophobic interactions: A:L.202, I.2 Hydrogen bonds: A:N.111, A:N.112, A:N.112, K.3 Salt bridges: A:H.231, K.3 Water bridges: I.2, I.2

5 x CA: CALCIUM ION(Non-covalent)

CA.4: 8 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, I.188, G.189, E.190 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:E.177, A:D.185, A:E.190 CA.5: 6 residues within 4Å: Chain A: E.177, N.183, P.184, D.185, E.190 Ligands: CA.4 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H2O.1, H2O.2 CA.6: 3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.59, A:Q.61, H2O.3, H2O.3, H2O.6 CA.7: 5 residues within 4Å: Chain A: N.19, I.20, N.21, R.35, Y.75 No protein-ligand interaction detected (PLIP) CA.8: 4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.193, A:T.194, A:I.197, A:D.200, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mikolajek, H. et al., Protein-to-structure pipeline for ambient-temperature crystallography at VMXi. Iucrj (2023)

Release Date

2019-08-21

Peptides

Thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermolysin

Related Entries With Identical Sequence