SMTL ID : 6sgf.3 (2 other biounits)

Molecular insight into a new low affinity xylan binding module CBM86, from the xylanolytic gut symbiont Roseburia intestinalis.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

2 x XYP- XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP-XYP.1: 9 residues within 4Å: Chain A: W.18, D.20, Y.38, Q.40, K.71, D.78, Y.86, M.110, T.112 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.40 XYP-XYP-XYP-XYP.2: 8 residues within 4Å: Chain B: W.18, Y.38, Q.40, K.71, D.78, Y.86, M.110, T.112 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.112

1 x CD: CADMIUM ION(Non-covalent)

CD.3: 3 residues within 4Å: Chain A: D.27 Chain B: D.63 Ligands: CL.4 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.27, A:D.27, B:D.63, H2O.8

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: D.27 Chain B: D.63 Ligands: CD.3 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: D.63 Chain B: D.27 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leth, M.L. et al., Molecular insight into a new low-affinity xylan binding module from the xylanolytic gut symbiont Roseburia intestinalis. Febs J. (2020)

Release Date

2019-11-20

Peptides

Beta-xylanase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Beta-xylanase

Related Entries With Identical Sequence