SMTL ID : 6sm1.1

Wild type immunoglobulin light chain (WT-1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: E.87, V.112, G.114 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.87, A:V.112, A:G.114, H2O.3, H2O.5, H2O.5

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: Q.42, F.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.42, A:Q.42 PEG.3: 3 residues within 4Å: Chain A: Y.40, L.50, Y.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.38, A:Y.40 PEG.4: 2 residues within 4Å: Chain A: S.69, T.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.69 Water bridges: A:T.78

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 8 residues within 4Å: Chain A: S.4, A.5, L.6, T.7, T.25, G.26, T.27, D.30 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kazman, P. et al., Fatal amyloid formation in a patient's antibody light chain is caused by a single point mutation. Elife (2020)

Release Date

2020-03-18

Peptides

Immunoglobulin lambda variable 2-14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Immunoglobulin lambda variable 2-14