SMTL ID : 6sms.1

Vegetative Insecticidal Protein 1 (Vip1Ac1) from Bacillus thuringiensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.184, D.186, E.193, N.222, D.225, D.235 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.184, A:D.186, A:E.193, A:N.222, A:D.235 CA.2: 5 residues within 4Å: Chain A: D.182, D.184, D.186, I.188, E.193 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.182, A:D.184, A:D.186, A:I.188, A:E.193, H2O.2 CA.3: 5 residues within 4Å: Chain A: Q.547, I.548, D.550, F.555, V.558 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Q.547, A:I.548, A:D.550, A:F.555, A:V.558, H2O.8

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: N.31, T.32, K.128, L.129, Q.140, V.141, L.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.31, A:L.129, A:L.129, A:Q.140 EDO.5: 6 residues within 4Å: Chain A: K.268, I.270, N.345, A.346, N.347, A.403 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.345 EDO.6: 7 residues within 4Å: Chain A: K.17, C.77, K.90, Q.112, L.113, D.114, F.169 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.17, A:K.90, A:K.90, A:L.113 Water bridges: A:Q.112

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain A: E.632, F.633, D.696 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.633, A:F.633

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rizkallah, P.J. et al., Bacillus thuringiensis insecticidal protein 1Ac, VIP1Ac. Not Published

Release Date

2021-02-10

Peptides

Vegetative Insecticidal Protein 1Ac from Bacillus Thuringiensis: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vegetative Insecticidal Protein 1Ac from Bacillus Thuringiensis