SMTL ID : 6snd.1 (1 other biounit)

crystal structure of LN01 Fab in complex with an HIV-1 gp41 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: S.12, N.107 No protein-ligand interaction detected (PLIP)

1 x DPV: dodecyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

DPV.2: 7 residues within 4Å: Chain A: T.30, K.31, Y.32 Chain B: Y.112 Chain C: W.10, Y.11, F.15 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:F.15 pi-Cation interactions: C:W.10 Salt bridges: A:K.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinto, D. et al., Structural Basis for Broad HIV-1 Neutralization by the MPER-Specific Human Broadly Neutralizing Antibody LN01. Cell Host Microbe (2019)

Release Date

2019-11-06

Peptides

LN01 light chain: A
LN01 heavy chain: B
Envelope glycoprotein gp160: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

LN01 light chain

LN01 heavy chain

Envelope glycoprotein gp160

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