SMTL ID : 6ssh.1

Structure of the TSC2 GAP domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: G.61, Q.62, Y.63, Q.81, P.83 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.62, A:Y.63, A:Y.63, A:Q.81 EDO.2: 8 residues within 4Å: Chain A: M.59, P.83, T.84, N.85, H.88, D.89, M.94 Ligands: EDO.5 No protein-ligand interaction detected (PLIP) EDO.3: 11 residues within 4Å: Chain A: I.10, Q.14, T.15, I.20, N.109, S.111, K.113, P.114, F.115, R.116, T.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.111, A:R.116, A:T.119 EDO.4: 6 residues within 4Å: Chain A: H.31, L.40, Y.63, Y.65, Q.81 Ligands: EDO.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.65, A:Q.81 Water bridges: A:H.31, A:Y.65 EDO.5: 5 residues within 4Å: Chain A: M.59, N.85, H.88, M.94 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.88 EDO.6: 5 residues within 4Å: Chain A: G.13, Q.14, T.15, H.16, E.19 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansmann, P. et al., Structure of the TSC2 GAP Domain: Mechanistic Insight into Catalysis and Pathogenic Mutations. Structure (2020)

Release Date

2020-05-27

Peptides

GTPase activator-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GTPase activator-like protein