SMTL ID : 6std.2 (1 other biounit)

SCYTALONE DEHYDRATASE PLUS INHIBITOR 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

10 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: E.155, D.156 Chain D: E.155, D.156 Ligands: CA.2, CA.9, CA.10 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: A:E.155, A:D.156, D:E.155, D:D.156, H2O.5 CA.2: 5 residues within 4Å: Chain A: D.156 Chain D: E.155, E.159 Ligands: CA.1, CA.9 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: D:E.155, D:E.159, A:D.156, A:D.156, H2O.20 CA.4: 2 residues within 4Å: Chain B: R.43, D.47 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:R.43, B:D.47, H2O.11, H2O.11 CA.6: 2 residues within 4Å: Chain C: R.43, D.47 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:R.43, C:D.47, H2O.13, H2O.14 CA.7: 1 residues within 4Å: Chain C: D.163 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:D.163, H2O.12, H2O.13, H2O.17, H2O.17 CA.9: 7 residues within 4Å: Chain A: E.155, D.156 Chain D: E.155, D.156 Ligands: CA.1, CA.2, CA.10 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: A:E.155, A:D.156, D:E.155, D:D.156, H2O.5 CA.10: 5 residues within 4Å: Chain A: E.155, E.159 Chain D: D.156 Ligands: CA.1, CA.9 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: A:E.155, A:E.159, D:D.156, D:D.156, H2O.4 CA.12: 2 residues within 4Å: Chain E: R.43, D.47 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:R.43, E:D.47, H2O.27, H2O.27 CA.14: 2 residues within 4Å: Chain F: R.43, D.47 4 PLIP interactions: 2 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:R.43, F:D.47, H2O.30, H2O.31 CA.15: 1 residues within 4Å: Chain F: D.163 5 PLIP interactions: 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:D.163, H2O.28, H2O.30, H2O.33, H2O.33

6 x MS2: 2,2-DICHLORO-1-METHANESULFINYL-3-METHYL-CYCLOPROPANECARBOXYLIC ACID [1-(4-BROMO-PHENYL)-ETHYL]-AMIDE(Non-covalent)

MS2.3: 20 residues within 4Å: Chain A: W.18, Y.22, Y.42, F.45, L.46, V.67, L.68, H.77, L.98, V.100, H.102, S.121, N.123, L.139, P.141, I.143, F.150, F.154, G.157, R.158 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.22, A:Y.42, A:F.45, A:V.67, A:L.68, A:V.100 Hydrogen bonds: A:Y.42 Water bridges: A:H.77 pi-Stacking: A:F.154 pi-Cation interactions: A:F.45 MS2.5: 20 residues within 4Å: Chain B: W.18, Y.22, Y.42, F.45, V.67, L.68, H.77, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150, F.154, G.157, R.158 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.22, B:Y.42, B:F.45, B:V.67, B:L.68, B:V.100, B:A.119 Water bridges: B:H.77 pi-Stacking: B:F.154 pi-Cation interactions: B:F.45 MS2.8: 20 residues within 4Å: Chain C: W.18, Y.22, Y.42, F.45, L.46, V.67, L.68, H.77, L.98, V.100, H.102, S.121, N.123, L.139, P.141, I.143, F.150, F.154, G.157, R.158 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:Y.22, C:Y.42, C:F.45, C:V.67, C:L.68, C:V.100 Water bridges: C:H.77 pi-Stacking: C:F.154 pi-Cation interactions: C:F.45 MS2.11: 20 residues within 4Å: Chain D: W.18, Y.22, Y.42, F.45, L.46, V.67, L.68, H.77, L.98, V.100, H.102, S.121, N.123, L.139, P.141, I.143, F.150, F.154, G.157, R.158 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:Y.22, D:Y.42, D:F.45, D:V.67, D:L.68, D:V.100 Hydrogen bonds: D:Y.42 Water bridges: D:H.77 pi-Stacking: D:F.154 pi-Cation interactions: D:F.45 MS2.13: 20 residues within 4Å: Chain E: W.18, Y.22, Y.42, F.45, V.67, L.68, H.77, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150, F.154, G.157, R.158 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:Y.22, E:Y.42, E:F.45, E:V.67, E:L.68, E:V.100, E:A.119 Water bridges: E:H.77 pi-Stacking: E:F.154 pi-Cation interactions: E:F.45 MS2.16: 20 residues within 4Å: Chain F: W.18, Y.22, Y.42, F.45, L.46, V.67, L.68, H.77, L.98, V.100, H.102, S.121, N.123, L.139, P.141, I.143, F.150, F.154, G.157, R.158 9 PLIP interactions: 9 interactions with chain F Hydrophobic interactions: F:Y.22, F:Y.42, F:F.45, F:V.67, F:L.68, F:V.100 Water bridges: F:H.77 pi-Stacking: F:F.154 pi-Cation interactions: F:F.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wawrzak, Z. et al., High-resolution structures of scytalone dehydratase-inhibitor complexes crystallized at physiological pH. Proteins (1999)

Release Date

1999-12-29

Peptides

Scytalone dehydratase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Scytalone dehydratase

Related Entries With Identical Sequence