SMTL ID : 6swc.1

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
34 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
6 x ZN: ZINC ION(Non-covalent)
1 x MET: METHIONINE(Non-covalent)
1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Coureux, P.D. et al., Cryo-EM study of an archaeal 30S initiation complex gives insights into evolution of translation initiation. Commun Biol (2020)
Release Date
2020-02-19
Peptides
30S ribosomal protein S3Ae: B
30S ribosomal protein S2: C
Zn-ribbon RNA-binding protein involved in translation: D
30S ribosomal protein S4: E
30S ribosomal protein S4e: F
30S ribosomal protein S5: G
30S ribosomal protein S6e: H
30S ribosomal protein S7: I
30S ribosomal protein S8: J
30S ribosomal protein S8e: K
30S ribosomal protein S9: L
30S ribosomal protein S10: M
30S ribosomal protein S11: N
30S ribosomal protein S12: O
30S ribosomal protein S13: P
30S ribosomal protein S14 type Z: Q
30S ribosomal protein S15: R
30S ribosomal protein S17: S
30S ribosomal protein S17e: T
30S ribosomal protein S19: U
30S ribosomal protein S19e: V
30S ribosomal protein S24e: W
30S ribosomal protein S27e: X
30S ribosomal protein S28e: Y
30S ribosomal protein S27ae: Z
30S ribosomal protein S3: 0
30S ribosomal protein aL41: 1
50S ribosomal protein L7Ae: 2
Translation initiation factor 1A: 5
Translation initiation factor 2 subunit gamma: 6
Translation initiation factor 2 subunit beta: 7
Translation initiation factor 2 subunit alpha: 8
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
A
C
B
D
C
E
D
F
E
G
F
H
G
I
H
J
I
K
J
L
K
M
L
N
M
O
N
P
O
Q
P
R
Q
S
R
T
S
U
T
V
U
W
V
X
W
Y
X
Z
Y
0
Z
1
0
2
3
5
6
6
7
7
8
8
9

30S ribosomal protein S3Ae

30S ribosomal protein S2

Zn-ribbon RNA-binding protein involved in translation

30S ribosomal protein S4

30S ribosomal protein S4e

30S ribosomal protein S5

30S ribosomal protein S6e

30S ribosomal protein S7

30S ribosomal protein S8

30S ribosomal protein S8e

30S ribosomal protein S9

30S ribosomal protein S10

30S ribosomal protein S11

30S ribosomal protein S12

30S ribosomal protein S13

30S ribosomal protein S14 type Z

30S ribosomal protein S15

30S ribosomal protein S17

30S ribosomal protein S17e

30S ribosomal protein S19

30S ribosomal protein S19e

30S ribosomal protein S24e

30S ribosomal protein S27e

30S ribosomal protein S28e

30S ribosomal protein S27ae

30S ribosomal protein S3

30S ribosomal protein aL41

50S ribosomal protein L7Ae

Translation initiation factor 1A

Translation initiation factor 2 subunit gamma

Translation initiation factor 2 subunit beta

Translation initiation factor 2 subunit alpha

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