SMTL ID : 6swn.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH iBET-BD1 (GSK778)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

1 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.1: 2 residues within 4Å: Chain A: Q.21, T.125 3 PLIP interactions: 1 Ligand-Ligand interactions, 2 interactions with chain A Water bridges: E.1 Hydrogen bonds: A:Q.21, A:T.125

1 x LWB: 4-[2-(methoxymethyl)-1-[(1~{R})-1-phenylethyl]-8-[[(3~{S})-pyrrolidin-3-yl]methoxy]imidazo[4,5-c]quinolin-7-yl]-3,5-dimethyl-1,2-oxazole(Non-covalent)

LWB.2: 11 residues within 4Å: Chain A: W.40, P.41, F.42, L.51, L.53, Y.56, C.95, Y.98, N.99, D.104, I.105 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.40, A:F.42, A:L.51, A:L.53, A:Y.98, A:Y.98, A:I.105, A:I.105, A:I.105 Hydrogen bonds: A:N.99 Water bridges: A:Q.44, A:C.95 pi-Stacking: A:W.40

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gilan, O. et al., Selective targeting of BD1 and BD2 of the BET proteins in cancer and immunoinflammation. Science (2020)

Release Date

2020-04-01

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 4

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